Estimation of translational importance of mammalian mRNA nucleotide sequence characteristics based on ribosomal profiling data O.A. Volkova1,*, Y.V. Kondrakhin2,3, R.N. Sharipov 1 2,3,4 Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia 2 Design ... Novosibirsk, Russia 4 Novosibirsk State University, Novosibirsk, Russia *ov@bionet.nsc.ru Keywords: ribosome profiling, RiboSeq, 5'UTR , mRNA , ... Until recent time there were no experimental data on the translation efficiency. ...

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... repeats: read sequences from file . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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Alignment COG1325 . ... It is supported by 29 positions - that's written on the scheme. ... Such are positions number 5 ( leucine opposite isoleucine , valine and methyonine ), 30 ( glutamic acid opposite arginine , glycine and serine ), 51 ( threonine opposite alanine , phenylalanine and serine ), 55 ( phenylalanine opposite leucine , histidine and tyrosine ), 111 ( phenylalanine opposite isoleucine , leucine and valine ), 123 ( valine opposite isoleucine , ...

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• SDP home page
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... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Projects . ... Education . People . ... Publications . ... TmrnaEnglish . tmRNA (also known as 10Sa RNA ) stands for transfer-messenger-RNA. The gene encoding the tmRNA is ssrA . It is found in all bacterial genomes that have been sequenced, and is an important part of translation regulation. ... Here you can found 3D models of tmRNA inside 70S ribosome at different positions. ... Copyright &? by the contributing authors. ... Ideas, requests, problems regarding TWiki? ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... The standard IUPAC one-letter codes for the amino acids are used. ... Ambiguities are indicated by listing the acceptable amino acids for a given position, between square brackets `[ ]'. ... If your pattern consists of one-letter amino acid codes only, without any ambiguous residues, you need not specify the '-', i.e. you can directly copy/paste peptide sequences into the text field. ... To search all sequences which do not contain a certain amino acid, e.g Cys, you can use <{C}*>. ...

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The normative version of the specification is in English. If English is not your first language, we plan to provide translations in other languages. ... We expect you to give us permission to republish the translated version and to allow readers to make copies without restrictions. ... The spec is quite long so translators may wish to share work on writing and reviewing translations. ... Joachim Schwarte <schwarte@iwb.uni-stuttgart.de> . ... Arsaell Benediktsson <arsaellb@ifi.uio.no> . ...

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Mustela . On a taxonomic position of the weasel (Carnivora, Mustela ) from the Cheju Island (South Korea) . ... The weasel from Cheju Island (formerly в?' Quelpart Island), which is situated in Korean Strait south of the coast of South Korea, was described as a separate species Lutreola quelpartis Thomas, 1908. ... Abramov A.V. 2000b. The taxonomic status of the Japanese weasel, Mustela itatsi (Carnivora, Mustelidae) // Zoologicheskii Zhurnal. ... A Pictorial Guide to the Mammals of Japan. ...

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... Advanced Screening by Similarity . ... Simple Query Form . Protein databanks: . ... Motif's length . threshold . Motif's power threshold . Alignment's power . ... of query sequence . End position of query sequence . ... Threshold of motif's . ... Threshold of alignment's . ... DNA/RNA Blosum 30 Blosum 50 Blosum 62 Dayhoff Johnson . ... Yes No . ... Sequence Alignment . ... Query sequence name . Enter or Paste here your Sequence without name OR Alignment . ...

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Электронная библиотека . ... Главная Ex Libris Книги Журналы Статьи Серии Каталог Wanted Загрузка ХудЛит Справка Поиск по индексам Поиск . ... Поиск по указателям . Результат поиска . Книга . Страницы для поиска . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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Evalign . Evalign is a computerised evaluation method for protein sequence alignment algorithm. It compares computer alignments with structural alignments of protein sequences and tells how correct your sequence alignment program is. It gives additional information on the characteristics of different alignment algorithms and shows types specific failings in alignment. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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... General Discussion >> Study >> PhD Student Position in Near-field Optics . ... PhD Student Position in Near-field Optics [ re: *NONE* ] . ... The School of Information and Communication Technology (ICT) at KTH, the Royal Institute of Technology in Stockholm announces one PhD Student position in Near-field Optics . Description of the position . ... Re: PhD Student Position in Near-field Optics [ re: Cezar ] . ... Re: PhD Student Position in Near-field Optics [ re: NePutin ] . ...

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... General Discussion >> Study >> PhD Student Position in Near-field Optics . ... PhD Student Position in Near-field Optics [ re: *NONE* ] . ... The School of Information and Communication Technology (ICT) at KTH, the Royal Institute of Technology in Stockholm announces one PhD Student position in Near-field Optics . Description of the position . ... Re: PhD Student Position in Near-field Optics [ re: Cezar ] . ... Re: PhD Student Position in Near-field Optics [ re: NePutin ] . ...

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... Scientific research . ... The scientific and other interests of the departments staff are described on their personal pages. ... Senior Researcher . 939-10-29 . ... Leading Researcher . ... Researcher . ... Leading Engineer . ... Head of Department . ... The scientific results of space research of the Moon . Lunar craters named in honor of members of the institute . ... Our address is: . Lunar and Planetary Department . ... Head of Department Shevchenko V.V. Electronic mail address: . ...

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... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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The QPointArray class provides an array of points. ... QPointArray ?(?int?nPoints, const?QCOORD?*?points?)? . ... void? point ?(?uint?i, int?*?x, int?*?y?)?const . ... bool? setPoints ?(?int?nPoints, const?QCOORD?*?points?)? . ... bool? putPoints ?(?int?index, int?nPoints, const?QCOORD?*?points?)? . ... Constructs a point array with nPoints points, taken from the points array. ... Returns the point at position index in the array. ... Copies nPoints points from the points array into this point array. ...

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... Credit Copyright: Yuichi Takasaka / TWAN / www.blue-moon.ca Explanation: Recorded on April 15th, this total lunar eclipse sequence looks south down icy Waterton Lake from the Waterton Lakes National Park in Alberta, Canada, planet Earth. ... Around 270 BC, the Greek astronomer Aristarchus also measured the duration of lunar eclipses - though probably without the benefit of digital clocks and cameras. ... Publications with keywords: lunar eclipse - Aristarchus . ... The Moon Entering Earth s Shadow ....

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This diagram illustrates the effects of absolutely positioning a box ("inner") with respect to a containing block established by a relatively positioned ancestor ("outer"). ... The "inner" box has been positioned relative to the top and left edges of the "outer" element's first inline box. ... The reference edges for positioning the "inner" box are indicated in the diagram by thick dashed lines. ... 1 Beginning of body contents.| ... 4 [(+200, -100)] 5 Inner 6 contents. ... Inner contents" is blue. ...

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