The role of electrostatics in the transcription regulation in prokaryotes. DNA phenotype Alexander Osypov Institute of cell biophysics of RAS, Russia, Pushchino MR, aosypov@gmail.com Physical properties of genome DNA define its shape in the functional space and influence its interactions with different proteins, esp. regulating transcription. DNA is a highly charged molecule and electrostatics contributes greatly to the subject. ...

Еще в разделе: (Показать все результаты (>355) - mccmb.belozersky.msu.ru/ )

• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/115.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/55.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/163.pdf

... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Technological Institute for Superhard and Novel Carbon Materials . ... Therefore, in solving the problems will be applied as specialized methods for the study of polyatomic structures - the method of empirical potentials Brenner . ... AREA: Condensed Matter Physics, Theoretical Physics, Physical Chemistry . ... Moscow State Uiversity . ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

Еще в разделе: (Показать все результаты (>46) - hpc.msu.ru/ )

• APPLICATIONS: Astronomy | Moscow University Supercomputing Center
• APPLICATIONS: Physicochemical Biology | Moscow University Supercomputing Center

О лаборатории . ... Лаборатория теоретической биофизики . ... PyMol is a powerful drawing instrument and here we show how to plot Fukui function with PyMOL after two calculation steps with FireFly (PC-GAMESS). continue reading.. ... Given a molecular object name and QM part selection name (which can be defined using either approach available in PyMol) it generates output file with corresponding input groups. ... All-atom automatic OPLS-AA topology generator . ... 2011 ERG Research Group . ...

Еще в разделе: (Показать все результаты (>60) - erg.biophys.msu.ru/ )

• comcon1 ERG Research Group: Лаборатория теоретической биофизики
• Peter Mamonov ERG Research Group: Лаборатория теоретической биофизики
• Firefly ERG Research Group: Лаборатория теоретической биофизики

... Laboratory has an authorship of original studies in the field of the theory of comblike macromolecules (molecular brushes) adsorbed on a surface. ... 2] I.I. Potemkin, " Elasticity driven spontaneous curvature of a 2D comb-like polymer with repulsive interactions in the side chains ", Eur. ... 4] I.I. Potemkin, " Persistence length of comblike polymers strongly adsorbed on a flat surface ", Macromolecules 2006 , 39 , 7178-7180 . ... 7] I.I. Potemkin, E.Yu. ... PSMTLab . ...

Еще в разделе: (Показать все результаты (>330) - polly.phys.msu.ru/ )

• publications.html

... Ab initio calculations on several low lying excited electronic states of the OsO4 molecule and the isoelectronic IrO4+ are performed within the quasirelativistic effective core potential approach. ... The corresponding transition energy in OsO4 is estimated to be 34575 cm-1; this value is in excellent agreement with the experimentally observed energy 35000 cm-1 The spin-orbit splitting for all the states mentioned above are found to be rather small. Coordination Chemistry Laboratory ...

Еще в разделе: (Показать все результаты (>1235) - chem.msu.ru/ )

• Structure and Interaction Energies of the Ar...Cl2 Complex. Application of the
• A Nonparametric Determination of the Internal Rotation Potential and Molecular
• Moscow University Chemistry Bulletin Vol. 45, No. 1, P. 19 (2004)

... In order to compare the number of different evolutionary stages obtained and X-ray luminosity of the chosen X-ray sources with the observed galactic values we use the sum of C/O+O/C , where C and O are the calculated and observed values of a given binary type, respectively. If we make comparison for a number of different binary species (for example, we compare the number of CV, number of X-ray pulsars,   total X-ray luminosity of LMXB, etc.), we write this criterion in the form: . ...

Еще в разделе: (Показать все результаты (>443) - xray.sai.msu.ru/ )

• Detection rate of binary compact star merging
• Results of calculations
• Effect of sources evolution on

... Among them there is forward modeling for uniform anisotropic halfspace to calculate ARS diagrams for different arrays (AM (U), AMN (E), dipole equatorial (D), three-pole (T), Y and Arrow-type (AT) array, etc.), when source of current is on the earth surface or at a depth. All linear arrays (AM, AMN, dipole axial) give anisotropy ellipses with axis ratio equal to anisotropy coefficient, while non-linear arrays (D and others) have this ratio equal to anisotropy coefficient in the 5-th power. ...

Еще в разделе: (Показать все результаты (>73) - geophys.geol.msu.ru/ )

Back to homepage >> . ... key words: [ melt inclusions, experiment, diffusion, boundary layer effect ] . ... In order to distinguish an influence of the boundary effects on the composition of melt inclusions, the experiment on growth of alkali feldspar (Fsp) crystal in the haplogranitic system (Q-Ab-Or) was performed. ... Estimation of an influence of the boundary effect on melt inclusion composition . ... The larger inclusion the weaker its influence on the boundary layer. ...

Еще в разделе: (Показать все результаты (>532) - geo.web.ru/ )

• The influence of boundary layer effects on the melt inclusions compositions.
• COMAGMAT MODEL

... Application of the PM7 quantum chemical semi-empirical method to the development of new urokinase inhibitors" . Katkova E.V., Oferkin I.V., and Sulimov V.B. The application of quantum-chemistry semi-empirical methods using the MOPAC programs to the search for new inhibitors is considered. ... Keywords: molecular modeling, quantum chemistry, semi-empirical methods, new inhibitors design, efficacy, optimal operating parameters, grid docking, direct docking. ...

Еще в разделе: (Показать все результаты (>344) - num-meth.srcc.msu.ru/ )

• "Calculation of optimal coefficients for quadrature formulas by the complete
• "Calculations of interactions in biomolecular systems: comparison of quantum
• "Simulation of a molecular structure formation as a result of thermal

... solvation nucleation of the polymorphs Solute-solute interactions, association parameters , thermodynamics parameters , conformations growth of the crystal Nature of solvent, intermolecular interactions (solute ­ solvent, solute-solute), conformations Lattice energy , entropy of the crystal, symmetry of the lattice, conformations The conformational manifolds is the candidate to be a coordinate of reaction Methods of investigations Quantum chemistry ...

Еще в разделе: (Показать все результаты (>38) - www.elch.chem.msu.ru/ )

• http://www.elch.chem.msu.ru/mole/lecture/probst.pdf
• http://www.elch.chem.msu.ru/mole/lecture/malev.pdf

... Description of the model of a minimal interaction of a gravity with scalar matter fields. ... Separation of equations for the physical degrees of freedom (a specially chosen gauge). ... Branon mass spectrum in the theory with a potential . Asymmetric background solutions and the defect of the cosmological constant. ... Generation of asymmetric brane Two scalar doublets Mass spectrum equation Solution even function odd function ( ( FL0) + FL1 ) provides an asymmetric brane localization for fermions ...

Еще в разделе: (Показать все результаты (>211) - qfthep.sinp.msu.ru/ )

• http://qfthep.sinp.msu.ru/talks2013/shleenkov.pdf
• http://qfthep.sinp.msu.ru/talks/ginzbbdark100912.pdf
• http://qfthep.sinp.msu.ru/talks2011/Balakireva.pdf

Electron and proton impact ionization of atoms and molecules . Theory of few-body Coulomb scattering This is one of the major topics in the research activity of our laboratory. ... Electron momentum spectroscopy (EMS) EMS is the (e,2e) method involving high incident energy and large momentum transfer. ... We develop a theory of the single- and double-ionization EMS processes in atomic and molecular systems. ... c) Laboratory of mathematical models of quantum scattering processes, 2012 . ...

Еще в разделе: (Показать все результаты (>12) - lmmqsp.sinp.msu.ru/ )

Research topics . ... This group is formed to study the reactions at semiconductor surfaces. ... Group members: . ... M.V. Lomonosov Moscow State University: . ... Dr. Tatiana S. Zyubina, senior scientific researcher (quantum chemical modeling) . ... Joint Semiconductors Surface Study group: research sketches . The Joint Semiconductors Surface Study (JSSS) group was developed on the base of Inorganic Chemistry division, Chemistry dept. of M.V. Lomonosov Moscow State University. ...

Еще в разделе: (Показать все результаты (>61) - www.inorg.chem.msu.ru/ )

... Applications of Molecular Mechanics to Metal Complexes" . ... Molecular mechanics study of the mixed-ligand lanthanide complexes using Gillespie-Kepert model . ... Within MM-GK, the same parameters are applicable to complexes of different coordination numbers/polyhedra. ... Gillespie-Kepert model . ... Using derived computational parameters, we calculated the geometry of 39 lanthanide ion nonaaqua complexes, 6 octaaqua complexes and 18 beta- diketonate and aqua-beta-diketonate complexes. ...

Еще в разделе: (Показать все результаты (>36) - analyt.chem.msu.ru/ )

• Molecular Mechanics Calculations of beta-Diketonate, Aqua, And

Hybrid States of Surface and Tamm Plasmon-Polaritons in Photonic Crystals B.I. Afinogenov, V.O. Bessonov, I.V. Soboleva, and A.A. Fedyanin Lomonosov Moscow State University, 1 Leninskie gory, 119991 Moscow, Russia afinogenov@nanolab.phys.msu.ru Abstract: Experimental observation of Tamm plasmon-polariton (TPP) and surface plasmonpolariton (SPP) hybrid mode in metal/photonic crystal system is reported. Interaction bet ween TPP and SPP leads to repulsion of their dispersion curves. ...

Еще в разделе: (Показать все результаты (>75) - nanolab.phys.msu.ru/ )

• Laboratory of Nanophotonics & Metamaterials

Study of jet transverse structure with CMS experiment at 10 TeV Natalia Ilina (ITEP, Moscow) for the CMS collaboration CMS PAS QCD-08-002 (2009) 1 LOMONOSOV09, MSU, Moscow 24/08/2009 Outline 1. ... 7 LOMONOSOV09, MSU, Moscow 24/08/2009 Monte Carlo predictions HERWIG++ Particle level Jet transverse structure for all jets (black lines) depends on while it does not depend on for gluon and quark jets. ...

Еще в разделе: (Показать все результаты (>245) - nuclphys.sinp.msu.ru/ )

• http://nuclphys.sinp.msu.ru/school/s08/s08_06.pdf

BRAGI . BRAGI is an interactive protein-modelling program. ... Display of proteins or non-proteins; Different file formats (Brookhaven, RDI, Sybyl MOL2) . ... Calculation and display of the molecular surface (coloured by electrostatics or hydrophobicity; solid or wireframe) . Calculation and display of secondary structure . ... SGI, HP, DEC, Sun, Linux (there exists a Linux directory in the distribution). ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

Еще в разделе: (Показать все результаты (>8630) - www.sai.msu.su/ )

• SAL- Other Scientific Fields - Physics Astronomy - SIMREF
• APOD: 2004 March 25 - An Orion of a Different Color
• SAL- Other Scientific Fields - Chemistry, Biology Related - gOpenMol

Laboratories \ Laboratory for The Sensory Systems of Vertebrates \ Goals and Tasks . Goals and Tasks . ... Electrophysiological Laboratory at the Utrish Marine Station . ... In the field of cetaceans hearing research: . ... Acuteness of the frequency selectivity (quality of the filters canals in the auditory system) in different species of dolphins constitutes the range of 30 to 50 that is 3-5 times higher than in most terrestrial mammals (excluding bats) and humans (about 10). ...

Еще в разделе: (Показать все результаты (>3635) - www.sevin.ru/ )

• Экологический Форум - Фундаментальная Экология: different wearers about
• Экологический Форум - Фундаментальная Экология: by a different concern
• Экологический Форум - Фундаментальная Экология: different wearers regarding

... The factors that play the key role in complex formation are as follows: the rate of protein diffusion to the docking site; long-range electrostatic interactions between protein surfaces, geometric and chemical complementarity of binding areas; molecular mobility at the protein­protein interphase, hydrogen bonds, Van der Waals interactions, hydrophobic interactions, and salt bridges. ... Three-dimensional protein molecules are constructed on the basis of data extracted from the Protein Data Bank. ...

Еще в разделе: (Показать все результаты (>42) - www.library.biophys.msu.ru/ )

• МОДЕЛИРОВАНИЕ ВЗАИМОДЕЙСТВИЯ МАГНИТНОГО ПОЛЯ С ОБЪЕМНЫМИ ВЯЗАНЫМИ СТРУКТУРАМИ

APPLICATION OF THE DIFFRACTION RADIATION INTERFEROGRAM OBTAINED AFTER THE INTERACTION OF AN ELECTRON BEAM WITH A SLIT TARGET D.A. Shkitov1), G.A. Naumenko1), M.V. Shevelev1), A.P. Potylitsyn1), H. Deng2), X. Wang 1) TPU, Tomsk, Russia 2) SINAP, Shanghai, China 2) In October 2011 a joint Russian-Chinese experiment on the extracted beam of the microtron TPU was carried out. ... Calculation taking into account the source self atten uation effect, this approach is based on the direct mathematical method. ...

Еще в разделе: (Показать все результаты (>123) - danp.sinp.msu.ru/ )

• http://danp.sinp.msu.ru/LAS/Nimb256_07_21Teplova.pdf
• http://danp.sinp.msu.ru/Articles_GSIB/nimb_Ar_clasterions_swansonandothers.pdf
• http://danp.sinp.msu.ru/LAS/Nimb254_jan07_200Shulga.pdf