. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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... A comparative study of thermodynamic for both natural and artificial RNA/DNA ­ protein complexes would establish bases for a specificity of complex formation. In particular, we have shown that aptamers could be used for a direct measuring of thrombin enzymatic activity in a solution. D 2002 Published by Elsevier Science B.V. Keywords: RNA/DNA ­ protein interactions; Ribosome; SELEX; RNA/DNA aptamers; Thrombin; Enzymatic activity 1. ... The aptamer binds to the protein with Kd = 0.5 nM. ...

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• http://rnp-group.genebee.msu.ru/pages/pdf/nar2004.pdf
• http://rnp-group.genebee.msu.ru/pages/pdf/biochem2002_1.pdf

... 203 When was Ptolemy's Star Catalogue in 'Almagest' Compiled in Reality? ... The initial data are star coordinates contained in the star catalogue. ... They lead to additional errors, and eliminating them provides additional accuracy. ... It is easy to see that if the coordinates of this star in Almagest have an error A and if vg is its velocity, that the error in the determination t* is about A/vi. ... One can find in [1] "real errors in coordinates of stars from the Almagest star catalogue. ...

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• http://hbar.phys.msu.ru/gorm/ahist/antikythera1.pdf
• http://hbar.phys.msu.ru/gorm/fomenko/fomenko2.pdf
• http://hbar.phys.msu.ru/gorm/fomenko/fomenko4.pdf

... Structure of Data . ... Catalog . ... In SAI OCL Catalog, we introduce our work on investigation of the Milky Way system of open star clusters. The main goal of our study is a search for new clusters using huge surveys. 168 new clusters have been already discovered by us using J,H,Ks data from 2MASS point source catalog. ... For 141 new clusters, we found their physical parameters using J,H,Ks data from 2MASS catalog and, for a number of clusters, our UBVRI CCD observational magnitudes. ...

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• SAI OCL Catalog Description

... The approach for estimation of the homology search program sensitivity in nucleotide case was proposed in paper I.Anderson, A.Brass , "Searching DNA databases for similarities to DNA sequences: when is a match significant?" ... Seven sequences were chosen to have length varying from 100 to 1000 bp. ... Each of the 1000 artificially evolved sequences was used as a query for database search with Genebee search, blast-2.0.8 and fasta-3.3 as search engine. ... Sequence length . ... 100 . ... Blast 2.0 ....

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• Picornaviruses: discovering big in small
• GeneBee
• LMI projects

V. N. Chubarikov . Editor-in-Chief . Prof., Dr. Sci. Phys.-Math.) ... Associate Editor . Member of the RAS . V. V. Alexandrov . ...

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• http://new.math.msu.su/Sites/demosite/Uploads/abstractsm50.58D32DCEDD634CB0AA8244EDE617F1DB.pdf

Pentium 4 2.2 GHz . ... Pentium D 3.0 GHz, serial . Pentium D 3.0 GHz, parallel or multithreaded . ... input , output ) . ... Pentium 4 2.2 GHz , P4B (Northwood), 512 Kb L2 cache, no HTT support, 2200 MHz, 400 MHz FSB, 512 MB PC800 RamBus RIMM RDRAM, 60 GB IDE HDD, Windows 2000 Professional SP4. ... Serial - PC GAMESS is running using only one core . Parallel or multithreaded - PC GAMESS is running using only both cores in parallel (tests 1,3,5,6) or multithreaded (tests 2 and 4) modes. ...

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• PC GAMESS/Firefly DOCUMENTATION - Potential Energy Surface (PES) scan features
• PC GAMESS/Firefly sample input file - relaxed surface scan in DLCs
• Potential Energy Surfaces with PC GAMESS/Firefly

Approach to mutation analysis of genetic sequences and building mutational database in context of HIV/AIDS and Tuberculosis treatment Sergeev, R.S., Tuzikov, A.V. United Institute of Informatics Problems, National Academy of Sciences, Minsk, Belarus, roma.sergeev@gmail.com, tuzikov@newman.bas-net.by Emergence of drug resistance has been recognized as a global threat since the era of chemotherapy began. ... On the lower level new original pathogen's genome sequences are analyzed. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/245.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/165.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/106.pdf

... Astronomy search engine . ... PhysicsWeb Home Page . ... Sternberg Astronomical Institute . ... Astro Space Center Home Page . ... Landau Institute for Theoretical Physics . ... Astronomy and Space Physics Dept of Kiev University . ... NATIONAL RADIO ASTRONOMY OBSERVATORY Home Page . University of Hawaii - Institute for Astronomy . ... Space Telescope Science Institute Home Page . ... Sky & Telescope: The Essential Magazine of Astronomy . ... Springer LINK - Physics Online Library . ... Home . ...

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Russian] . The Geophysical department at MSU Geological faculty . The laboratory of near-surface electrical prospecting . ... TES technology for 2D resistivity sounding data processing, visualization and interpretation (unpublished article). ... Algorithms and computer programs for decision of forward and inverse problems of resistivity method have been developed in our laboratory. ... 119899, Russia, Moscow, Moscow State University, Geological Faculty, Department of Geophysics. ...

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• Faculty of Geology >> Departments

... The factors that play the key role in complex formation are as follows: the rate of protein diffusion to the docking site; long-range electrostatic interactions between protein surfaces, geometric and chemical complementarity of binding areas; molecular mobility at the protein­protein interphase, hydrogen bonds, Van der Waals interactions, hydrophobic interactions, and salt bridges. ... Three-dimensional protein molecules are constructed on the basis of data extracted from the Protein Data Bank. ...

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• http://www.library.biophys.msu.ru/art004/article.pdf

Off-centering of impurities is an interesting phenomenon that was discovered in 1965 in KCl crystals doped with Li. ... Investigation of narrow-gap IV-VI semiconductors (mainly lead telluride PbTe and lead selenide PbSe) doped with off-center impurities (like germanium or sulfur) attracts much attention due to impurity-induced phase transitions in these incipient ferroelectrics. ... A.I. Lebedev and I.A. Sluchinskaya. ... A.I. Lebedev, I.A. Sluchinskaya, V.N. Demin and I.H. Munro. ... Russian Acad. ...

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• EXAFS studies of the local structure of In in PbTe, SnTe and GeTe
• Манцевич Владимир Николаевич
• Theory of electronic properties of disordered semiconductors and systems with

... In addition to the direct effect of acidic solutions on tree crowns, resulting in tissue damage and leaching of metabolites, the acid impact modify soil properties, which is believed to be the most important in forest degradation. ... We assessed critical loads of acid deposition and their exceedance for forest soils in the European part of the former Soviet Union using a simple balance method and mapped them within 1.0°x0.5° longitude per latitude grid cells. ...

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• CRITICAL LOADS OF ACID DEPOSITION IN EUROPEAN RUSSIA

... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... Technological Institute for Superhard and Novel Carbon Materials . ... Therefore, in solving the problems will be applied as specialized methods for the study of polyatomic structures - the method of empirical potentials Brenner . ... AREA: Condensed Matter Physics, Theoretical Physics, Physical Chemistry . ... Moscow State Uiversity . ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: Mathematics | Moscow University Supercomputing Center
• APPLICATIONS: Structure and Dynamics of Atomic-Molecular Systems | Moscow
• APPLICATIONS: Engineering Sciences and Mechanical Engineering | Moscow

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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e-mail: aviktorov@bk.ru) , , , , , , , , , russian culture, russian civilization, spirituality, safety, archetypes, religion, mentality, the base of culture, tradition , . In this article the problem how to keep the Russian culture and Russian civilization is discussed through the prism of such key conceptions as safety, spirituality and the confrontation of different civilizations. ...

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• http://www.socio.msu.ru/vestnik/archive/2012/3/13.pdf

The course is called Russian Civilizations Through American Eyes The course is a study of Russian history as it written and taught in the United States. The students discuss the different perceptions of Russian history from their knowledge and western interpretation of the same events or time frame. ... The classes meet for Second Year on Tuesday, 14:30-16:00 (Room 219) and 16:20-17:50 (Room 120). The Fourth year students meet Thursday, 16:20- 17:50 (Room 120). ...

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... Nonlinear fiber optics . ... member of the Editorial Board for the Laser Physics journal . ... Member of the steering committee of the international conference on Raman spectroscopy (ICORS): Budapest, 2002; Brisbane, 2004; Yokohama, 2006; London, 2008 . Member of the steering committee of the International Laser Physics workshop: Bratislava, 2002; Hamburg, 2003; Trieste, 2004; Kyoto, 2005; Lausanne, 2006; Leon, 2007; Trondheim, 2008; Barcelona, 2009 . ... International conference ?Laser Optics? ...

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... I will touch upon the following points: ­ fast evolution of the sizes of quiescent (elliptical) galaxies between z = 2 and z = 1; ­ prolonged star formation histories of dwarf spheroidal galaxies in the Local Group; ­ apparent lack of external sources of cold gas accretion for the nearby spiral galaxies; ­ old stellar ages and magnesium overabundance of the large-scale disks of nearby lenticular galaxies. ... This discovery has challenged the recognized scenarios of elliptical galaxy evolution. ...

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• http://sn.sai.msu.ru/~sil/preprints/ic3653.pdf
• http://sn.sai.msu.ru/~sil/preprints/al227.pdf
• http://sn.sai.msu.ru/~sil/preprints/aa6758-06.pdf