... The typical data processing workflow for protein identification and/or quantification in MSbased shotgun proteomics consists of a number of nontrivial procedures, including denoising and deisotoping of MS data, peptide identification using a protein database search, postsearch processing and validation, protein inference and quantification. ... Pyteomics includes parsers for common data formats used in MSbased proteomics, which can help bridging a gap between different formats. ...
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