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Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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Advancing fusion gene detection from RNA-seq data Konstantin Okonechnikov, Thomas F. Meyer, Fernando GarcМa-Alcalde Max Planck Institute For Infection Biology, Berlin, Germany okonechnikov@mpiib-berlin.mpg.de Gene fusion events and other types of chromosomal translocations are known to be related to several types of cancers and can be interpreted as hallmarks for the corresponding development stage of the disease. ... Our proposal combines both techniques to find initial list of fusion candidates. ...

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trendence Graduate Barometer Europe 2011 About the survey ­ About trendence trendence Graduate Barometer Europe is an annual online student survey which allows students to express their opinion on topics re lated to career and education. ... Ulrike Heyne Project Manager trendence Graduate Barometer Europe 2011 About the survey Facts and benefits How does it work? ... If your students take part in the trendence Graduate Barometer, they will receive an exclusive Student Report. ...

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