... 2 from allpy import protein . ... 5 # Create sequences from string representation of sequence body . 6 sequence_1 = protein . ... 9 # Create alignment from sequences . 10 alignment = protein . ... 15 # For each sequence, print number of gaps and non-gaps in alignment . ... 19 for column in alignment . ... 24 print " %s : %s gaps, %s non-gaps" % ( row . ... 26 # Print number of gaps in each column . ... 29 column_gaps = 0 . 30 for sequence in alignment . ... 31 if sequence not in column : . ...

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• allpy: 166806efc570 test/usecase1.py
• allpy: 2e9cbe32a554 test/usecase1.py
• allpy: 8a81996f8bda test/usecase1.py

A full system of equilibrium differential equations for the finite number of suspension lines (n = 28) of square parachute is derived. ... One can determine the shapes of inflated canopy radial cross-sections, stress distribution of radial ribbons on the canopy surface and fabric stress between them, drag coefficients for various line lengths and air-permeability by means of computer simulation. ... Initially, this problem was solved assuming D p = const over total canopy of square parachute. ...

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• Scientific Achievements
• Large-Scale Load Stabilization
• Education

A GENETIC ALGORHYTM FOR OPTIMIZING A NEURAL NETWORK CAPABLE TO LEARN FOR FOOD SEARCHING IN A RADIAL MAZE Budilova E.V., Chepurnova N.E., Chepurnov S.A, Teriokhin A.T. M.V.Lomonosov Moscow State University, Dept. of Biology. ... The upper platform has a hole in the middle and several radially directed tubular canals ("arms") each of which can contain a peace of food and has doors opening only in the centrifugal direction. ... The task of the animal is to visit only those arms which contain food. ...

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• http://ecology.genebee.msu.ru/3_SOTR/CV_Terekhin_publ/1999_Seasons_EER.pdf
• http://ecology.genebee.msu.ru/3_SOTR/CV_Terekhin_publ/2000_Longev_JEvolBio.pdf

Tsunami source parameters versus earthquake magnitude and depth: Monte Carlo simulation Mikhail Nosov and Anna Bolshakova M.V.Lomonosov Moscow State University, Faculty of Physics, Moscow, Russian Federation (m.a.nosov@mail.ru) European Geosciences Union General Assembly 2011 Vienna | ... Among all possible parameters of a tsunami source we consider only those parameters which can be unambiguously calculated from the vertical component of co-seismic bottom deformations. ...

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• http://ocean.phys.msu.ru/courses/stathyd/2001%20Ferrari%20et%20al.%2C%20The%20temperature-salinity%20relationship%20of%20the%20mixed%20layer.pdf

О лаборатории . ... Лаборатория теоретической биофизики . ... Here the guide to use RESP technique based on calculations from Firefly or GAMESS-US is presented. ... Note, that RESP algorythm will fit potential in the set of points which are selected according to $PDC group in the input-file. ... Нет комментариев " Using RESP with GAMESS-US and Firefly (PC-GAMESS) " . ... Using Firefly/GAMESS-US efficiently . ... Scannin? in Using Firefly/GAMESS-US efficiently? 2012 ERG Research Group . ...

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• gromacs ERG Research Group: Лаборатория теоретической биофизики

Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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• Parametric segmentation of the EEG
• S.Borisov

... Basic statement: "Mathematics is much clever, than Mathematician" It means, that after the scientist or engineer developed new mathematical model and designed corresponding equations, the solution to these equations produces new information unpredictable for the author! ... This vibration excites the shear wave in tissue 2 sx 2 - (ct + ) s x = Fx 2 t t Studies in Fluid Dynamics of water jet are connected with two main problems: 1. Flows in contracting nozzle forming high-speed jet. ...

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• http://acoustics.phys.msu.su/teachers/gusev_files/rao24-2.pdf
• http://acoustics.phys.msu.su/teachers/shanin_files/~shanin/papers/polosa_dd.pdf
• http://acoustics.phys.msu.su/teachers/gusev_files/diff2012.pdf

... ib)] a + b - i - j + E B Loop over i Loop over j Loop over a · Calculate tb = (ia | ... ib)] · Loop over B ­ Calculate = a - ­ Special sum over b: ­ Accumulate i - j + EB W =W + b tb b + · End loop over B End loop over a End loop over j End loop over i Present work goals Further reduce computational costs Reduce algorithmic complexity Formal analysis of the computational costs Each particular type of terms results in computational ... Ngrid Calculate S ( ) , =1.. ...

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• Firefly/PC GAMESS DOCUMENTATION - LARGE SCALE MCQDPT2 and XMCQDPT2

E-mail: lmis@miem.ru The experimental research results of the basalt cardboard thermal treatment with the microwave electromagnetic energy application are presented in the article. The weight change diagrams of the basalt cardboard samples during the drying process are given. ... 100%), . ... 500 , ­ - . ... m, 120 600 110 100 500 90 400 80 70 300 60 50 40 200 30 20 100 10 0 0 5 10 2 3 1 20 30 40 50 60 t, .2. ( ­ ). 1 ­ ; 2 ­ ; 3 ­ . ...

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• http://nuclphys.sinp.msu.ru/conf/epp10/XING.pdf
• http://nuclphys.sinp.msu.ru/conf/epp10/Medvedev.pdf
• The European X- Ray Free-Electron Laser

... Полная версия этой страницы: семинар Г. т'Хофта в Стекловке . Студенческий форум Физфака МГУ > Наука физика > Конференции, семинары и другие мероприятия . ... 19 мая 2011 г., четверг, 16:00 . ... Семинар состоится в четверг 19 мая 2011 года в 16 часов в МИАН им. В.А. Стеклова, ул. Губкина, 8, в конференц-зале на 9-м этаже. ... The talk is based on the paper "A class of elementary particle models without any adjustable real parameters", arXiv:1104.4543. ...

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• семинар Г. т'Хофта в Стекловке - Студенческий форум Физфака МГУ
• Студенческий форум Физфака МГУ > Higgs boson lighter than previously predicted

... CompHEP Models. ... CompHEP is based on an idea of the physical model. ComHEP Models are very simular to physical models in high energy physics, like Standards Model or MSSM. ... Two of them are versions of the Standard Model (SU(3)xSU(2)xU(1)) in the unitary and t'Hooft - Feynman gauges. ... Standard Model in Feynman gauge . ... This output can be written in LaTeX format and in the form of CompHEP model files, which allows one to start calculations of processes in the new physical model. ...

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• faq [CompHEP]

... Новости . ... Анекдоты . ... Форум . ... Мехмат , история , декан . Отделения: математики , механики , вечернее . ... MMOnline Информационный портал о мехмате МГУ . ... MMOnline и мехмат МГУ ждут вас. ... 21 июня Магистратура мехмата МГУ проведет День открытых дверей . ... Проект 'Математический форум мехмата МГУ' вышел в финальную часть конкурса 'Золотой сайт 2010' . ... На мехмате начинает работу научный семинар Современные проблемы математики и механики . ... Математический форум мехмата МГУ . ...

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• Программа конференции "Fundamental Mathematics Today"
• MMOnline | Новости | Программа конференции "Fundamental Mathematics Today"
• MMOnline | Новости | Заседание Московского математического общества 25 марта

... Supercomputing Technologies in Science, Education and Industry Almanac Series . ... DRIVER: To develop a model of the interstellar hydrogen distribution in the heliosphere. To apply this model for the analysis of experimental data from different spacecraft. ... The results of the simulations of the formation and evolution of molecular clouds can be used as initial conditions for the current star formation in galaxies. ... Research Computing Center (RCC) of Lomonosov Moscow State University . ...

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• APPLICATIONS: Electronics and Acoustics | Moscow University Supercomputing
• APPLICATIONS: Radiophysics | Moscow University Supercomputing Center
• APPLICATIONS: Mathematics | Moscow University Supercomputing Center

... Class . ... public class Schema . ... This is a set of ProtoVariable, the DimensionSet which is the union of the Dimensions used, and any global Attributes. ... contains (java.lang.String name) . ... Returns the set of attributes associated with this, also know as the "global" attributes. ... a new Array containing the elements of this set. public ProtoVariable get (java.lang.String name) . ... If a different ProtoVariable with the same name, was in the set, it is returned, otherwise null is...

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• : Class Attribute
• FileUtils
• : Class ProtoVariable

... Distances between sequences . It is considered that the space, where all amino acids and sequences are analysed, is a metric one. ... When the distance between amino acids is entered, it is rather easy to consider such measure as pair distance between sequences in any position of alignment (in fact, this distance is just a distance between two amino acids). As distance is an additional quantity, pair distance between sequences on all alignment positions can be easily defined. ...

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• SDPpred
• Hydrophobic clusters
• HF clusters: algorithm

... Original Russian Text © I.A. Bizyaev, 2014, published in Doklady Akademii Nauk, 2014, Vol. ... MATHEMATICAL PHYSICS Nonintegrability and Obstructions to the Hamiltonianization of a Nonholonomic Chaplygin Top I. A. Bizyaev Presented by Academician V.V. Kozlov February 24, 2014 Received April 4, 2014 DOI: 10.1134/S1064562414060192 EQUATIONS OF MOTION AND FIRST INTEGRALS We consider the problem about the rolling of an unbalanced dynamically asymmetric ball on a plane surface [1­3, 15]. ... Chaotic Dyn....

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• Institute of Computer Sciences - Publications

'mpif.h' * Именованные константы - параметры задачи INTEGER DLEN_, IA, JA, IB, JB, M, N, MB, NB, RSRC, $ CSRC, MXLLDA, MXLLDB, NRHS , NBRHS, NOUT , $ MXLOCR, MXLOCC, MXRHSC PARAMETER ( DLEN_ = 9, IA = 1, JA = 1, IB = 1, JB = 1, $ M = 9, N = 9, MB = 2, NB = 2, RSRC = 0, $ CSRC = 0, MXLLDA = 5, MXLLDB = 5, NRHS = 1, $ NBRHS = 1, NOUT = 6, MXLOCR = 5, MXLOCC = 4, $ MXRHSC = 1 ) DOUBLE PRECISION ONE PARAMETER ( ONE = 1.0D+0 ) * * Локальные переменные INTEGER ICTXT , ...

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• http://num-anal.srcc.msu.su/list_wrk/ps1/ch4st3.ps
• http://num-anal.srcc.msu.su/eng_math/redict/9.htm
• http://num-anal.srcc.msu.su/meth_mat/parl_prg/pr2_3.htm

... Moscow Lomonosov State University . ... Consider an open network consisting of N nodes (stations) and V(N) cars, which circulate among the stations. The network is divided into n clusters. ... Cluster j contains d N j N stations, Е j = 1 n d N j = 1. ... Later j and v denote cluster numbers and they take values from 1 to n. The arrival process to a station of cluster j is a Poisson one with the rate l j . ... The destination station in the cluster v is chosen uniformly. ...

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... 3D magnetosphere . ... Data . ... Magnetosphere . ... Magnetic field at the selected point Module of the Magnetic field distribution along Sun-Earth line Noon-Midnight magnetosphere structure . ... Point coordinates, where magnetic field will be calculated: . ... Magnetic field at MD outer edge . ... Magnetic field at TC inner edge . ... Distance to external edge of MD . ... Distance to inner edge of MD . ... Magnetopause stand-off distance . ... Distance to inner edge of geotail current sheet . ...

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... Original Russian Text Copyright © 2004 by Kovaleva, Loskutov. ... Loskutov** Presented by Academician A.R. Khokhlov December 30, 2003 Received January 14, 2004 In this paper, it is shown that diffusion-induced chaos in a distributed system can be suppressed by feedback-free parametric action. ... The behavior of the system at different A(0) is illustrated in 0012-5016/04/0005-0105 © 2004 ЕдIД "Nauka / Interperiodica" 106 S 0 P 2 QP 4 CP 6 C KOVALEVA, LOSKUTOV P 8 10 A(0), 10­2 M Fig. ...

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• http://chaos.phys.msu.ru/loskutov/PDF/VasLoskRybUdin2000.pdf
• http://chaos.phys.msu.ru/loskutov/PDF/Reprint_JPA_2011_44_175102.pdf
• http://chaos.phys.msu.ru/loskutov/PDF/JPA_2000_bill.pdf