... OPLS-AA topology generation is a very complex task because of huge amount of the atomtypes described this force field. ... TPPMKOP is an utility developed for the automatic topology generation working well with OPLS-AA force field. ... This database is continually upgrading by our research group. ... OPLS-AA patch for different types of molecules ERG Research Group: Лаборатория теоретической биофизики написал (Февраль 8th, 2016 4:27 дп) . ... All-atom automatic OPLS-AA topology generator . ...

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• Python script for processing FRAP image set ERG Research Group: Лаборатория
• python ERG Research Group: Лаборатория теоретической биофизики
• Peter Mamonov ERG Research Group: Лаборатория теоретической биофизики

Previous article . Next article . ... Experimental basis for development of preparation technology and quality control methods for dry extract applicable of prostate diseases . ... All findings were used in the development of a correspon- ding normative documentation. Moscow University Chemistry Bulletin . 2004, Vol. ... 3, P. 208 . Copyright (C) Chemistry Dept., Moscow State University, 2002 . ... Copyright (C) Chemisty Department of Moscow State University . ...

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• Moscow University Chemistry Bulletin Vol. 48, No. 3, P. 212 (2007)
• On The Force Field Parameters For Metal Ion Coordination Sphere in Molecular
• Moscow University Chemistry Bulletin Vol. 48, No. 1, P. 49 (2007)

... Recommended values . Start word length . Start length of motiff for Multiple sequence alignment. ... Max N Mismatches . ... Min score . ... Gap parameter . This parameter defines gap scoring. the grater this value is the stronger gap will be panalysed . ... If inforation content of a column is less than given value the column should be not included into alignment. the grater this value is the stronger gap will be panalysed . ... Max loop . Max energy of a helix . ... cgcatagctc cacca . ...

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• RNA Kinetics: Theory

Modules | ... Apache HTTP Server Version 2.0 . ... ISAPI Extensions within Apache for Windows . ... isapi_module . ... It allows Internet Server extensions ( e.g. ISAPI .dll modules) to be served by Apache for Windows, subject to the noted restrictions. ISAPI extension modules (.dll files) are written by third parties. ... In the server configuration file, use the AddHandler directive to associate ISAPI files with the isapi-handler handler, and map it to them with their file extensions. ...

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• Other Programs - Apache HTTP Server
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... Voyager s Neptune . ... Data - Voyager 2 , NASA Planetary Data System Explanation: Cruising through the outer solar system, the Voyager 2 spacecraft made its closest approach to Neptune on August 25, 1989, the only spacecraft to visit the most distant gas giant. Based on the images recorded during its close encounter and in the following days, this inspired composited scene covers the dim outer planet, largest moon Triton , and faint system of rings. ... Triton: Neptune's Largest Moon . ...

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• Journal "Peremennye Zvezdy"
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... About lab . ... Online Journal "Computer graphics and multimedia" (in russian) . ... Algorithms for calculating parameters of virtual scenes in computer vision tasks . ...

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ADAPTIVE METHOD OF EYE BLINK ARTIFACT SUPPRESSION IN EEG Chernomorets A.A., Nasonov A.V., Krylov A.S. Lomonosov Moscow State University, Faculty of Computational Mathematics and Cybernetics, Laboratory of Mathematical Methods of Image Processing http://imaging.cs.msu.ru Electroencephalography (EEG) is the neurophysiologic measurement of the electrical activity of the brain recorded by electrodes placed on the scalp. ... In this article, suppression of blink artifacts is considered. ...

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• http://imaging.cs.msu.ru/pub/2013.PRIA.Mamaev_Lukin_Yurin.HermiteNLM.en.pdf

Geant4 toolkit for simulation of HEP experiments V.Ivanchenko From name of Geant4 collaboration BINP, Novosibirsk, Russia & CERN, Geneve, Switzerland Outline Geant4 history Design and tools Geant4 physics June 2002 release Prospects for future June,24 ACAT-2002 V.Ivanchenko Geant4 2 History 90th: About 100 FORTRAN MC programs in the world. The most popular in HEP GEANT3. ...

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• http://acat02.sinp.msu.ru/presentations/konash/Slides_ACAT2002.doc
• http://acat02.sinp.msu.ru/presentations/seixas/posterandre.pdf

... pair_cores: pass xyz_only parameter to markup_loader . ... 6 def from_record ( cls , container , record , name = None ): . ... 8 result = cls ( container , name = name ) . ... 17 def to_record ( self ): . ... 29 def refresh ( self ): . 30 for number , monomer in enumerate ( self . ... 38 for index , monomer in enumerate ( self . ... 59 name = 'case' . ... 62 for monomer in self . ... 75 assert len ( markup ) == len ( result . ... 76 for monomer , mark in zip ( result . ... 87 case = self . ...

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BLASTCLUST - BLAST score-based single-linkage clustering. ... BLASTCLUST automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA. ... The primary input format for BLASTCLUST is a FASTA-format sequence file. ... Another type of input is a sequence hit-list previously saved by BLASTCLUST (in this case BLASTCLUST will use pre-computed HSP data instead of making de novo comparisons). ...

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Big Data has revolutionized biomedicine in areas of drug discovery, diagnostics, clinical trial and personalized treatment. On one hand new analytical methods referred to as "omics technologies" (RNA and DNA sequencing and other technologies) allow to generate unprecedented amount of molecular data for each patient. ... This contest is backed by IT and BioMed Clusters of Skolkovo Foundation and of EMC Corporation. ... Algorithms and software for sequencing and nucleic acid analysis . ...

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... Comparison of computational efficiency of explicit and implicit schemes for the sediment transport problem in coastal zones" . Sukhinov A.I., Protsenko E.A., Chistyakov A.E., and Shreter S.A. An unsteady spatial two-dimensional sediment transport model in coastal zones is considered. ... Keywords: mathematical model, sediment transport, distributed computing, parallel programming, dynamics of marine sediments, shallow water equations, diffusion-convection-reaction equation. ...

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• "High performance modeling of modern deposition processes for optical coating

... The RADEN data bank produced at the Department of Chemistry of Moscow State University is designed as well to accumulate published information on radiative parameters of diatomic molecules, as to analyse it and recommend the more reliable values. ... electronic transition moments D ( R ); . ... dipole moments, . ... FACTUAL RECOMMENDED DATABASE contains now the ab initio and experimental electronic transition moments for more than 250 band systems which belong to more than 100 diatomic molecules. ...

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System parameters on Digital UNIX . ... Digital and Cray use the number of bytes as the KIND -parameter. ... LOGICAL Default byte word KIND number = 4 1 4 LOGICAL Default double quad KIND number = 4 8 16 INTEGER int15 int31 int63 KIND number = 2 4 8 digits = 15 31 63 radix = 2 2 2 range = 4 9 18 huge = 32767 2147483647 9223372036854775807 bit_size = 16 32 64 REAL single double quad KIND number = 4 8 16 digits = 24 53 113 maxexponent = 128 1024 16384 minexponent = -125 -1021 -16381 ...

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LangueDOC . ... Texts . ... Apply the program BoxReader to transform the Toolbox document into an XHTML formtat that uses nested tags to represent structure. ... Apply an XSLT stylesheet to transform the XHTML file into the content.xml of the OpenOffice format. ... Add the resulting content.xml into a complete OpenOffice text document replacing the old content.xml . ... Apply the converse XSLT transform to obtain the document in the XHTML nested-span format that can be displayed in the browser . ...

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ABOUT ONE METHOD OF CALCULATION AVERAGE VALUE OF THE PARAMETER USING MEASUREMENTS' WEIGHTS Mitina O.V., Mitin V.I. 1 MSU, dept. of psychology, 125009, Moscow, Mokhovaya.11, b. 5, omitina@yahoo.com Russian Research Center "Kurchatov Institute", valentinmitin@yahoo.com. ... Here we suggest the following method iterative algorithm calculating. ... Weight functions on an iterative step j are calculated using the formula wij = 1 j 2 exp[( N i - N N i wij wij j- 1 ) 2 / 2 2j ] . ...

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• http://www.mce.biophys.msu.ru/archive/doc24959/eng.pdf
• http://www.mce.biophys.msu.ru/archive/doc184890/eng.pdf
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THE REETHERM DATA BANK FOR MODELING OF GEOCHEMICAL PROCESSES WITH PARTICIPATION OF RARE-EARTH ELEMENTS K.G.Morgunov, G.R.Kolonin, G.P.Shironosova Institute of Mineralogy and Petrography SB, RAS, Novosibirsk This study was supported by the Russian Fundamental Research Foundation (Project No. 98-05-65299) and by the program Universities of Russia - fundamental researches (grant 2787) Herald DGGGMS RAS 5 (15)'2000 v.2 URL: http://www.scgis ...

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Chiral symmetry and form factors of neutrino-nucleon interactions. Kanshin Kirill Vereshkov Grigory Southern Federal University, Russia QFTHEP '11, Sochi 24th Sept.­ 1st Oct. ... The united theory of leptonnucleon interactions · Neutrino Charged Currents · Neutrino Neutral Currents Kanshin K., Vereshkov G. Southern Federal University, Russia Page 2 Chiral symmetry and form factors of neutrino-nucleon interactions. ... It is based on meson dominance and chiral symmetry of strong interactions. ...

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... 4.4 Imbedding HTML in a Document . In the following discussion of SPECIAL processing
, I will assume that rtftohtml has not been customized. If it has, the text styles used to create special effects may be different. ... Normally, if your RTF document contained the text "<cite>hello</cite>", the translator would output this as: "&lt;cite&gt;hello&lt;/cite&gt;". ... If, however, you want the <cite></cite> to be interpreted as HTML markup, you must format the tags using Hidden and Shadow. ...

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... Online Services | ... Chart of Nuclear Quadrupole Deformations. ... Electronic Chart of Deformation gives to one possibility to obtain in comfortable form (analogous to that of well-known Charts of the Nuclides) numerical information for various nuclear deformation parameters (quadrupole moment Q and quadrupole deformation parameter b 2 ) for ground states of many nuclei and contains the data from three sources: . ... 2 + ) data; . ... Chart of Nuclear Quadrupole Deformations structure. ...

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• CDFE => Online Services => Nucleus Ground State Parameters
• CDFE => Online Services => Calculator and Graph Engine for Atomic Nuclei
• CDFE => Online services => Chart of nucleus shape and size parameters