MetaFast : fast reference-free graph-based comparison of shotgun metagenomic data Sergey V. Kazakov1, Vladimir I. Ulyantsev1, Veronika B. Dubinkina2,3, Alexander V. Tyakht2, Dmitry G. Alexeev 1 2 3 2 ,3 ITMO University ... (State Un iversity), Dolgoprudny, Russia Since the emergence of high-throughput genomic sequencing technologies, a huge volume of data has been accumulated describing complex microbial communities ( microbiota ) ... Example of MetaFast output on a set of real data. ...

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Predictor of DVM-program performance . Preliminary design . ... 3.1 Representation of the program as hierarchy of intervals . ... 3.2.2 Simulation of parallel execution of DVM-program . ... The predictor is intended for performance analysis and debugging of DVM-programs without usage of a real parallel computer (access to which is usually limited or complicated). ... time needed for execution of interprocessor communications; . ... execution time; . ... lost time. ... Processor time ( CPU_time ) . ...

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Arushanyan O.B., Volchenskova N.I., Zaletkin S.F. Calculation of expansion coefficients of series in Chebyshev polynomials for a solution to a Cauchy problem // Moscow University Mathematics Bulletin.2012. ... 211-216. ... The solution of such a system and its derivatives are expanded in shifted series in Chebyshev polynomials of the first kind. Algorithms to determine the expansion coefficients are described. ...

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The Octotron Approach: Towards Autonomous and Reliable Operation of Supercomputers Alexander Antonov, Dmitry Nikitenko, Pavel Shvets, Sergey Sobolev, Konstantin Stefanov, Vadim Voevodin, Vladimir Voevodin, Sergey ... @parallel.ru Research Computing Center, M.V.Lomonosov Moscow State University, Moscow, Russia Project Goals · to discover all types of failures in supercomputers as well as their root causes and relationships; · to react automatically to any ... Model-based Approach Benefits 1. ...

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• Distributed Modular Monitoring System: a New Approach to Supercomputer
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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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Abstract This work is devoted to the development of quantum theory of coupled fivefrequence parametric processes in active aperiodic nonlinear photonic crystals, which consist of a process of frequency downconversion and two upconversion processes. ... The spectral density of fluctuations of the quadrature components at frequencies both below and above the frequency of the laser, as well as their mutual spectral density is considered. ...

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• Laboratory of solid-state lasers and coherent spectroscopy

COBORDISMS AND FINITE GROUP ACTIONS IN THE WORK OF TARAS PANOV In works of T. Panov [5]­[7] the cobordism theory and formal group laws are applied to the study of the fixed point sets of Z/p-actions. Characteristic classes and cob ordisms of manifolds with simple Z/p-action. A Z/p-action on a manifold M is called simple if all connected components of the fixed point set have trivial normal bundle. ... El liptic genus for manifolds with an action of the group Z/p. Russian Math. ...

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... Therefore two component approach is needed (GVDM /soft component/+QCD /hard component/). ... In the models with "soft-wall" square of meson mass is proportional to the number of meson . ... 14 Energy dependence of cross section (soft component) and hard component For GVDM (soft) component the energy dependence was chosen in the Regge-type form 1.29 s p ( s ) = 114 * + s 1600 0.06 . ... F2 ( x, Q 2 ) Particle Data Group, 2007 Blue line is the soft (GVDM) component. ...

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... In the small-x approximation: u u = x p (neglecting also the quark masses) p A.V . Lipatov QFTHEP 2010 , Golitsyno , Russia , September 10, 2010 Calculations III KMR unintegrated PDFs M.A. Kimber, A.D. Martin, M.G. Ryskin, PRD 63, 114027 (2001) 2 f q x , k 2 , 2 ~T q k 2 , 2 [ Pqq вq x , k T P ... Kutak, DIS'08 sea quark density is approximated by the last gluon splitting, i.e. f s q 2 x , k 2 , 2 ~ P qg в f g x , k T , 2 T A.V ...

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... Thus, the development of a method of synthesis of signals of finite duration, optimal in the sense of maximum concentration of energy in specified frequency ranges, is the actual problem. ... Erik Larsen, Ronald M. Aarts, "Audio Bandwidth Extension: Application of Psychoacoustics, Signal Processing and Loudspeaker Design", John Wiley & Sons, ISBN: 0-470-85864-8, September 2004. ... Time-frequency decomposition, 2. ... Shaping of the energy spectrum envelope of high-frequency content, 4. ...

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Laboratory of Liquid Crystals . ... LCOptimizer is a realization of algorithm for calculation of nematic and cholesteric LC structure in PDLC droplets. ... Current version of LCOptimizer software consists of the following units: . ... lcdis3 -- quick change of external field, surface tension or director field distribution in already prepared input file . ... User Manual . User Manual contains general information about the program, input and output description, and some additional tips. ...

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... QUANTUM INFORMATION AND COMPUTATION Absolute Robustness of the First Principal Fourier State Component and Noise Suppression in Hilbert Space Yu. ... 2, Moscow, 119992 Russia e-mail: skulik@qopt.phys.msu.su Received March 28, 2006 Abstract--The effect of the absolute robustness of the first principal Fourier-state component is developed upon rounding off the density matrix elements. ... This is interpreted as the absolute robustness of the first principal component of the Fourier state density...

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NMW survey overview . Access image archive . ... The New Milky Way survey aims to detect bright (V<13.5) optical transients near the Galactic plane using an automated wide-field (8x6 deg.) system capable of surveying the whole Milky Way area visible from the observing site in one night. ... All images obtained during the transient search survey are available online (please use the image archive access form ). ... Images per field: . ... Images per night: . ... Milky Way imaging time: . ...

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Moscow State University Belozersky Institute of Physico-Chemical Biology . Department of Electron Microscopy is a sub-division of A.N. Belozersky Institute of Physico-Chemical Biology . ... We are interested of how eukaryotic cell is organized, formed and functioned. Since A.N. Belozersky Institute of Physico-Chemical Biology is one of the scientific departments of Moscow State University ? ... Understanding the metaphase chromosome architecture remains a basic challenge in cell biology. ...

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The Trac Configuration File = [[TracGuideToc]] Trac configuration is done by editing the '''`trac.ini`''' config file, located in `<projectenv>/conf/trac.ini`. ... If do not do this but nevertheless intend to use a global option file with your new environment, you will have to go through the newly generated conf/trac.ini file and delete the entries that will otherwise override those set in the global file. ... That component allows the workflow to be configured via this section in the trac.ini file. ...

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... The Science Operation Department is composed of Astronomers, Telescope Instruments Operators(TIOs) and Data Handling Administrators(DHAs). ... Astronomers have proposed several methods to quantitatively measure the amount of turbulence above the telescope, which the most common ones is Differential Image Motion Monitor (DIMM). In optical testing, the Hartmann test is the common method to test the quality of optical components. ... Hartmann mask consists of 48 lenses. ...

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... Simultaneous measurement of characteristics of bending and valence bands of water in D2 O solutions, KBr and KCl and using genetic algorithms in conjunction with variation methods allowed increasing accuracy of estimation of Fermi resonance coupling constant and of Fermi resonance contribution into formation of water Raman valence band. ... This energy transfer can explain existence of the shoulder in low-frequency part (in the region 3300 cm-1 ) of water Raman valence band. ...

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i 1 Summar y of 3 P3 "Simulations and Computations in Theoretical Physics and Phenomenology": -- Automated Calculation and Simulation Systems -- Thorsten Ohl и -- Universitat Wurzburg -- и ohl@physik.uni-wuerzburg.de ACAT 2002, Moscow State University, June 28, 2002 Th. ... Status and Trends at ACAT 2002 . ... Ohl Automatic Calculation Systems ACAT 2002 Mission Fully automated calculation and simulation systems in par ticle physics aim to produce model parameters process e. g. cuts L m, g, . ...

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X Workshop on Particle Correlation and Femtoscopy 25-29 August, 2014 Higher flow harmonics and ridge effect in PbPb collisions with HYDJET ++ model Czech Technical University in Prague SINP MSU, Russia V.L. Korotkikh, I.P. Lokhtin, S.V. Petrushanko, A.M. Snigirev SINP MSU Gyulnara Eyyubova, Project OPVK CZ.1.07/2.3.00/30.0034 1 Outline HYDJET ++ model (hydro + jet ) Description of elliptic flow v 2 Triangular flow v3 and higher Phys. Comm. ... HYDJET++ 31 ...

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Next] [Contents] [Index] [netCDF Home Page] [Unidata Home Page] . ... June 1997 . ... Unidata Program Center . NetCDF User's Guide for C . ... 2 - Components of a NetCDF Dataset . ... 4 - Use of the NetCDF Library . ... 9 - NetCDF File Structure and Performance . 10 - NetCDF Utilities . ... Appendix A - Units . Appendix B - File Format Specification . Appendix C - Summary of C Interface . Appendix D - NetCDF 2 C Transition Guide . ... NetCDF User's Guide for C - 6 Nov 1997 . ...

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