Secondary structures in the coding regions of mRNAs: literature survey and comparison of prediction methods Aleksandra Vasileva3, Michael Kiening1, Dmitrij Frishman1, 1 2,3 Department of Bioinformatics, Technische UniversitДt MЭnchen ... 195251 , Russia, aleksandra.vasileva.spbpu@gmail.com mRNA molecules contain three main domains ­ 5'UTR (untranslated region), CDS ( coding region), and 3'UTR ... One of the options in this case is to compute the distance between two RNA structures. ... Fig. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/165.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/39.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/53.pdf

This module provides for documents with Server Side Includes (SSI). ... Any document with handler of "server-parsed" will be parsed by this module, if the Includes option is set. If documents containing server-side include directives are given the extension .shtml, the following directives will make Apache parse them and assign the resulting document the mime type of text/html : AddType text/html .shtml AddHandler server-parsed .shtml The following directive must be given for ... cgi . ...

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• Apache module mod_example
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• Apache's Handler Use

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. EVENTS . Russian version . Laboratory of Associating Polymers and Colloids . NEWS . HOME . Home . RESEARCH . Research interests . Objects . Methods . Applications . EDUCATION . Education . RESEARCH GROUP . Staff . PhD students . Undergraduate students . ALUMNI . Former staff . Former PhD students . Former undergraduate students . PROJECTS . Projects . PUBLICATIONS . Selected papers . Patents . Reviews . COLLABORATION . Collaboration . VIRTUAL TOUR . Virtual tour of the lab . CONTACTS . Contacts . WELCOME!

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• site Carousel With Variable Elements Widths | Lemmon jQuery

... Upstream open reading frames regulate translation of the long isoform of SLAMF1 mRNA that encodes costimulatory receptor CD150. ... More than 40% of human genes contain upstream open reading frames (uORF) in their 5'-untranslated regions (5'-UTRs) and at the same time express at least one truncated mRNA isoform containing no uORF. ... CD150 is a member of the CD2 superfamily, a costimulatory lymphocyte receptor, a receptor for measles virus, and a microbial sensor on macrophages. ...

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... This program was created for correlating chosen regions in the series of fts images. ... Chosen regions' . ... In this section the program counts the integral for each region of the grid for each image. ... As a matter of fact, the integral is total brightness of the region and it is counted by 'int_tabulated' IDL function. ... In addition, the program will show the count of the regions which correlate with the corresponding region (the brighter region means the bigger count) and its contour. ...

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• Data bases of Natural Satellites. Documentation. Sources
• Jupiter Outer Satellite Orbit Ephemerides.
• Anna Mel'nik - Description of the catalog

... Abstract A. V. Dmitriev, A. V. Ivanov, A. R. Khokhlov, Numerical simulation of light propagation through a diffuser, Fundamentalnaya i prikladnaya matematika, vol. 15 (2009), no. 6, pp. ... In this article, the light propagation in a diffuser with optically soft inclusions is described with the help of the Fokker--Planck equation, i.e., a transfer equation with a diffusion term in the space of radiation propagation directions. ... 8, 9] , x1 , : 1 D = (3 - x1 ), 6 3 x1 = 2 d x( )cos sin . ...

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MATSYM - symbolic matrix processor . ... To use the program you will need a MAT file (liked CIR file: "User manual for CIRSYM program") of your system. ... In first string of MAT file enter any text you want to be the title of your system. ... Starting from string 2 (if is not comments - "*") enter the system element name, incident row and column and, optionally, its value. ... To generate a solution, run MATSYM.exe and enter "system_file_name.CIR" or click on the "ENTER" (in "MAT" case). ...

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... Class . ... PREV CLASS NEXT CLASS . FRAMES NO FRAMES . ... FIELD | CONSTR | METHOD . DETAIL: FIELD | ... public interface AttributeIterator . ... Use the Iterator methods to fetch elements sequentially. ... Method Summary . ... Returns true if there are more elements. ... next () . Returns the next element. ... Returns true if there are more elements. public Attribute next () . ... Calls to this method will step through successive elements. ...

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• : Interface DimensionIterator
• : Interface ProtoVariableIterator
• : Interface VariableIterator

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• Align tool for DNA-protein complexes

M obile A stronomical Sy stem of TE lescope- R obots MASTER-II Kislovodsk Lomonosov Moscow State University, Sternberg Astronomical Institute , Moscow Union "Optic" , Kislovodsk Solar Station Latitude = 43 o љ44'.767љN; Longitude = 42 o љ31'.417љE; Altitude = 2067љm MASTERљIIљ(8љsquareљdegress) + MASTERљVWF(VeryљWideљFieldљCameras (FOV=800 square degrees, Timeљresolutionљupљtoљ150љms, with unfiltered m_lim=14m on 5 sec. exposure, and ~10.5m with 0.15 sec) . ... 11h 38m 38.0s , -09d 59m 59s) . ...

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• Meteo :: Kislovodsk Database ::

... The national strategic management system in Russian power industry is far from perfect and is in the process of its formation after a long period of radical reform in the industry. ... This article s goal is to offer a more adaptable conceptual model for national strategic management in a branch of economy (on the example of the electric power industry). ... National strategic management, power industry, conceptual model, level of environmental uncertainty. ... Public Administrarion". ...

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... Interaction classes . ... List of Contact Types: . ... Contact with Major Groove of DNA by helices, loops and Minor Groove by any element(s) . ... Contact with Major Groove of DNA by strands, loops and Minor Groove by any element(s) . ... Contact with Major Groove of DNA by loops and Minor Groove by any element(s) . ... Contact with Major Groove of DNA by any element(s) and Minor Groove by helices, loops . ... Contact with Major Groove of DNA by any element(s) and Minor Groove by loops . ...

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... A Combined Iterative Transform Method for Wave Propagation in Random Media . ... A method is presented to combine Fourier transform and finite elements for layers with randomly varying shear modulus. Fourier transform is applied to the horizontal direction. ... The assumption of a stochastic process of the shear modulus in the horizontal direction is new. ... The functional dependency on the transform coordinate leads to a loss of orthogonality of the Fourier transform. ...

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• Abstract (Invited)

... Lectures : Nanomagnetism / Fundamentals I and II 1. a. b. c. d. 2. a. b. c. d. 3. a. b. c. d. e. Introduction Diamagnetism Paramagnetism Ferro-, Ferri- and Antiferromagnetism Magnetic susceptibility and permeability Magnetic order and magnetic interactions Magnetic exchange (direct, indirect, and superexchange) Dipolar magnetic interaction Spin-orbit interaction Local magnetic moments and spin-polarized electron band structure ...

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• Fundamentals of Nanotechnology, 2009 | MSU Nanotechnology Education and
• Fundamentals of Nanotechnology, 2009 | Научно-образовательный центр по

... Paul Baum (Penn State University) . Dirac Operators and K theory for discrete groups . In this talk the BC (Baum-Connes) conjecture for discrete groups is reformulated using Dirac operators. ... Algebras of functions on stratified spaces . ... A. Connes proved that Hochschild homology of the algebra of smooth functions on a manifold corresponds to the Rham complex and that periodic cyclic homology (of the algebra) corresponds to the de Rham cohomology (of the manifold). ...

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• Publications (Russian)
• Publications (English)

Electron and proton impact ionization of atoms and molecules . Theory of few-body Coulomb scattering This is one of the major topics in the research activity of our laboratory. ... Electron momentum spectroscopy (EMS) EMS is the (e,2e) method involving high incident energy and large momentum transfer. ... We develop a theory of the single- and double-ionization EMS processes in atomic and molecular systems. ... c) Laboratory of mathematical models of quantum scattering processes, 2012 . ...

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Russian Journal of Coordination Chemistry, Vol. ... The Molecular Mechanic Approach to Coordination Compounds: Force Field Based on the Gillespie-Kepert Model . ... Abstract - The set of parameters for calculating the geometry of coordination compounds is suggested on the basis of the molecular mechanic approach complemented by the Gillespie-Kepert model. ...

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Distributed systems as pattern formation models: space-time behavior investigation and elements of dynamics control". ... A new method of local dynamics analysis of coupled map lattices (CML) was proposed. ... New effects of global behavior of CML was found. Maps can represent some systems. ... And the points represent state of the system, which was determined by Rybalko method (Lambda values; color = period = order, black = zero period = chaos) and the period of cycle (P values). ...

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• http://chaos.phys.msu.ru/loskutov/PDF/Galss_ceramics.pdf
• http://chaos.phys.msu.ru/loskutov/PDF/PHDK634.pdf
• http://chaos.phys.msu.ru/loskutov/PDF/TMPh_quadratic_cml.PDF