IMPALA: Integrating Matrix Profiles And Local Alignments 1. ... Primary preprocessing Prepare the following files : i. a collection of PSI-BLAST-generated profiles with arbitrary names and suffix .chk; ii. a collection of profile master sequences , associated with the profiles , each in a separate file with arbitrary name and a 3 character suffix starting with c; the sequences can have deflines; they need not be sequences in nr or in any other sequence ...

Еще в разделе: (Показать все результаты (>6610) - kodomo.cmm.msu.ru/ )

• TracEnvironment тАУ Tanchiki
• Help: templating

To use a command with no argument: date . ... To use a command with a single argument: cd newdir . The cd command (used to change from one directory to another) takes the name of the directory newdir as its argument. To use a command with several arguments: cat file1 file2 file3 . The cat command takes the names of three files as arguments. ... This explains the name of the command - it concatenates any files given to it as arguments. To 'quote' an argument: ls 'part 1' . ...

Еще в разделе: (Показать все результаты (>894) - comet.sai.msu.ru/ )

• Examples of using the ls command
• Examples of environment variable names
• Examples of creating command alias in the Korn shell

... Apache HTTP Server Version 2.0 . ... For example, the following configuration will map /cgi-bin/script.pl to /usr/local/apache2/cgi-bin/script.pl in all cases: . ... A request for http://www.example.com/directory/file.html will be satisfied by the file /usr/local/apache/vhosts/www.example.com/directory/file.html . ... A request for http://www.domain.example.com/directory/file.html will be satisfied by the file /usr/local/apache/vhosts/example.com/d/o/m/domain/directory/file.html . ...

Еще в разделе: (Показать все результаты (>721) - itpm.msu.su/ )

• Dialing out with chat
• Installation
• mod_userdir - Apache HTTP Server

This module provides support for dynamically configured mass virtual hosting . ... Source File: mod_vhost_alias.c . ... For simple name-based virtual hosts you might use the following directives in your server configuration file: UseCanonicalName Off VirtualDocumentRoot /usr/local/apache/vhosts/%0 . A request for http://www.example.com/directory/file.html will be satisfied by the file /usr/local/apache/vhosts/www.example.com/directory/file.html . ... Module: mod_vhost_alias . ...

Еще в разделе: (Показать все результаты (>122) - neptun.sai.msu.ru/ )

• Apache module mod_example
• Mapping URLs to Filesystem Locations - Apache HTTP Server
• Apache module mod_setenvif

... Installing PHP for PWS/IIS 3 , PWS 4 or newer and IIS 4 or newer versions. ... Double click on the new string value and enter the path to php.exe in the value data field. ex: c:\php\php.exe . ... Highlight the new key and in the right side pane, double click the "default value" and enter phpfile . ... Right click on the phpfile key and select New->Key , name it Shell . ... Highlight the new key command and in the right side pane, double click the "default value" and enter the path to php.exe . ...

Еще в разделе: (Показать все результаты (>2084) - oit.cmc.msu.ru/ )

• LDAP functions
• Servers-Netscape and iPlanet
• Apache HTTP Server: Security Tips

This module is contained in the mod_access.c file, and is compiled in by default. ... allow from env= . deny . ... Syntax: allow from host host .. ... Module: mod_access . The allow directive affects which hosts can access a given directory. ... Example: BrowserMatch ^BadRobot/0.9 go_away <Directory /docroot> order allow,deny allow from all deny from env=go_away </Directory> In this case browsers with the user-agent string BadRobot/0.9 will be denied access, and all others will be allowed. ...

Еще в разделе: (Показать все результаты (>366) - rtm-cs.sinp.msu.ru/ )

• Apache module mod_example
• Apache module mod_imap
• The Linux Public Web Browser mini-HOWTO

All Firefly versions can take optional command line arguments. ... firefly [optional command line options in any order] [optional list of working directories] . ... The list of most widely used command line options is given below: . ... Disables validity check of the command line arguments (e.g., check for valid names of files and directories, etc...) passed to Firefly. ... However, if this option is not given, one must provide the list of working directories when running Firefly in parallel mode. ...

Еще в разделе: (Показать все результаты (>83) - classic.chem.msu.su/ )

• PC GAMESS/Firefly DOCUMENTATION - running in parallel using LAM/MPI
• PC GAMESS/Firefly DOCUMENTATION - running in parallel under Windows using
• PC GAMESS/Firefly DOCUMENTATION - running in parallel under Windows using WMPI

Expands the parameters to the query that was used to display the page. ... format="..." format string for each entry, default $name=$value . ... encoding="..." the encoding to apply to parameter values; see ENCODE for a description of the available encodings. ... Name of the parameter . ... String value of the parameter. Multi-valued parameters will have a "row" for each value. $n or $n() . ... QUERYPARAMS{format="<input type='hidden' name='$name' value='$value' encoding="entity" />"}% . ...

Еще в разделе: (Показать все результаты (>42439) - dualopt1.cmm.msu.ru/ )

• %TOPICTITLE% (1 vs. 2) - TWiki
• %TOPICTITLE% (9 vs. 13) - TWiki

... Recommended values . Start word length . Start length of motiff for Multiple sequence alignment. ... Max N Mismatches . ... Min score . ... Gap parameter . This parameter defines gap scoring. the grater this value is the stronger gap will be panalysed . ... If inforation content of a column is less than given value the column should be not included into alignment. the grater this value is the stronger gap will be panalysed . ... Max loop . Max energy of a helix . ... cgcatagctc cacca . ...

Еще в разделе: (Показать все результаты (>145) - bioinf.fbb.msu.ru/ )

• SDPsite - Algorithm Format requirements
• SDPsite - PF07978
• SDPsite - PF01171

RFC 775 Directory oriented FTP commands Page 1 DIRECTORY ORIENTED FTP COMMANDS David Mankins (dm@bbn-unix) Dan Franklin (dan@bbn-unix) A. D. Owen (ADOwen@bbnd) As a part of the Remote Site Maintenance (RSM) project for ARPA, BBN has installed and maintains the software of several DEC PDP- 11s running the Unix operating system. ... We have added four commands to our server: XMKD child Make a directory with the name "child". ... The reply codes for XMKD, however, are a bit more complicated. ...

Еще в разделе: (Показать все результаты (>53741) - mirror.msu.net/ )

• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc775.txt.pdf
• http://mirror.msu.net/pub/gentoo-portage/www-apps/mediawiki/files/postinstall-1.18-en.txt
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/pdfrfc/rfc1558.txt.pdf

... This program was created for correlating chosen regions in the series of fts images. ... Chosen regions' . ... In this section the program counts the integral for each region of the grid for each image. ... As a matter of fact, the integral is total brightness of the region and it is counted by 'int_tabulated' IDL function. ... In addition, the program will show the count of the regions which correlate with the corresponding region (the brighter region means the bigger count) and its contour. ...

Еще в разделе: (Показать все результаты (>200) - lnfm1.sai.msu.ru/ )

... Previously, fileio received the alignment torn-apart into sequence representations as strings with gaps, sequence names and descriptions. ... line source . ... 6 def __init__ ( self , * args , ** kw ): . ... init__ ( self , * args , ** kw ) . ... 9 self . ... 12 def attach ( self , widget ): . ... 15 widget [ command ] = lambda * args , ** kw : self . ... 17 def _command ( self , * args , ** kw ): . ... 24 def _set ( self , sender , * args , ** kw ): . ... 47 def insert ( self , * args , ** kw ): . ...

Еще в разделе: (Показать все результаты (>59769) - kodomo.fbb.msu.ru/ )

• allpy: 54e1535eeab3 sandbox/ttk.py
• allpy: 80043822a41e README.devel
• Help: templating

Электронная библиотека Попечительского совета . ... Taylor D., Jepson B. - Learning Unix for Mac OS X Panther . ... Название: Learning Unix for Mac OS X Panther . Авторы: Taylor D., Jepson B. Аннотация: . ... This edition covers the Panther version of Mac OS X. Язык: . ... books, about Mac OS X 2nd . ... books, about Unix . books, about Unix security . ... Common Unix Printing System (CUPS) . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

Еще в разделе: (Показать все результаты (>14371) - lib.mexmat.ru/ )

• Lester A. - MAC OS X Tiger in a Nutshell :: Электронная библиотека
• Kaplan J., Dunn R. - The .NET Developer's Guide to Directory Services
• Sobell M.G., Seebach P. - A Practical Guide to UNIXR for Mac OSR X Users ::

... Give an example of chemical reaction between a salt and an acid leading to the formation of another salt and a base. (1 point) [Solution] . ... Write the reactions of chromium (III) bromide with hydrogen peroxide in acidic and basic media. (2 points) [Solution] . ... In the reactions, specify the structures of all substances. (3 points) [Solution] . ... Three substances A, B, and C were mixed in the amount of three moles each. ... Example problems in chemistry for the entrance exams ( main round ) ....

Еще в разделе: (Показать все результаты (>398) - chem.msu.ru/ )

• Influence of Zonal Factor and Agricultural Treatment on Atrazine Toxicity in

... Compilation and execution with the NAG compiler . Peculiarities in the NAG compiler . System parameters The Numerical Algorithms Group Ltd Wilkinson House Jordan Hill Road Oxford OX2 8DR infodesk@nag.co.uk Tel: +44 1865 511245 Fax: +44 1865 310139 NAG offers a Fortran 90 system which behaves as a compiler but in reality translates to C (except for the PC version). ... CERN had at that time a total of 80 000 code lines working with NAG's Fortran 90 compiler, version 1.1. ...

Еще в разделе: (Показать все результаты (>11867) - crydee.sai.msu.ru/ )

• Checking Compatibility of Video Hardware
• Adding Variables to CONFIG.SYS
• Appendix D: The grammar of CSS2

... Download NPG-explorer . ... Build nucleotide pangenome . ... Here we provide a table for 3 Brucella genomes: all: embl :CP002459 BRUMM chr1 c Brucella melitensis M28 chromosome 1 all: embl :CP002460 BRUMM chr2 c Brucella melitensis M28 chromosome 2 all: embl :CP003176 BRUAO chr1 c Brucella abortus A13334 chromosome 1 all: embl :CP003177 BRUAO chr2 c Brucella abortus A13334 chromosome 2 all: embl :CP002078 BRUPB chr1 c Brucella pinnipedialis B2/94 chromosome 1 all: ... Fix bugs....

Еще в разделе: (Показать все результаты (>7265) - mouse.belozersky.msu.ru/ )

• Geometrical core

... NetCDF User's Guide for C . This appendix specifies the netCDF file format version 1. ... NC_VARIABLE nelems [var .. ... 4344 4601 0000 0000 0000 0000 0000 0000 C D F 001 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 17220 17921 00000 00000 00000 00000 00000 00000 [magic number ] [ 0 records ] [ 0 dimensions (ABSENT) ] 0000 0000 0000 0000 0000 0000 0000 0000 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 \0 00000 00000 00000 00000 00000 00000 00000 00000 [ 0 global atts (ABSENT) ] [ 0 variables (ABSENT) ] . ...

Еще в разделе: (Показать все результаты (>177) - angel.cs.msu.su/ )

• ExtensionFileFilter
• Appendix A Units
• : Package ucar.netcdf

... Parsimony method . ... It is based on the following principle: the ancestral sequences (posed in nodes of a phylogenetic tree) should be such that the minimal required number of character replacements on the branches of the tree is less than for any other choice of sequences. ... If the preliminary character of the node is * , but the output character of its immediate ancestor is some letter (say, X ), and its set of possible characters contains X , then the output character of the node is also X . ...

Еще в разделе: (Показать все результаты (>1472) - monkey.belozersky.msu.ru/ )

• SDPpred
• ETS numeration assumed
• Inquiry information || Rule of four sequences

... Run source ./setup.csh 6. ... When you will start to work next time, run setups in following order : cd /data1/atlas/work source ../software/12.0.8/setup.csh cd testarea/12.0.8/ source $ATLAS_ROOT/../work/cmthome/setup.csh -tag=12.0.8 To exclude first two lines, just add to your .login these lines : # add Atlas env-s : source /data1/atlas/software/12.0.8/setup.csh After that next time just do : source $ATLAS_ROOT/../work/cmthome/setup.csh -tag=12.0.8 cd /data1/atlas/work/testarea/12.0.8/ . ...

Еще в разделе: (Показать все результаты (>13) - lhe.sinp.msu.ru/ )

• Brief CompHep Installation Instruction

... Pairwise Tabular Tabular with headers . E-value threshold . Diagonal threshold . ... Escherichia coli str. ... W3110 Yersinia pestis KIM10+ Mycobacterium tuberculosis CDC1551 Bacillus subtilis subsp. subtilis str. ... Algorithm: Sergei Spirin, Yury Pekov . Programming: Yury Pekov . ... Funding: Ministry of Education and Science of the Russian Federation, State Contract No. 07.514.11.4006 (algorithm) . Russian Foundation for Basic Research, grant no. 13 07 00969 (web interface). ...

Еще в разделе: (Показать все результаты (>30) - mouse.genebee.msu.ru/ )

• Nhunt: program for nucleic acid sequence similarity search
• ConClus