... Alternative core new atoms (%) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Geometrical core of a set of structures is a subset of alignment positions those atoms are disposed similarly in all structures. ... For any two positions included into geometrical core, the distances between CA atoms of those positions in all structures may differ not more than the value of the parameter "Distance spreading". ...

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... Minimal size of Clud clusters (residues) . ... An alignment of a set of structures is a set of positions , to each position some atoms from different structures correspond. ... Hydrophobic cluster of a single protein structure is a separated pool of nonpolar atoms. Usually there is the biggest cluster in the protein called hydrophobic core. ... ConClus program is able to detect of conservative hydrophobic clusters for a family of related protein domains or just for a set of aligned proteins. ...

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... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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. SDPpred: a tool for prediction of amino acid residues . that determine differences in functional specificity of homologous proteins .

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• SDPpred
• About authors ot this complex
• About this project

... If there's no significant multiple alignment , including the sequence, that you interest, then the secondary structure is built, using only the energy model (just the potential energy of the system is minimized), but very often such method will give unreliable results. ... It should be mentioned that by default, at alignment case, the RNA secondary structure will be predicted for the first sequence of the alignment. ... It is done through optimizing, not the real, but model energy of the structure. ...

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• Screening of pattern or alignment against PROTEIN databank

... day commit -- a lot of changes fasta.py: universal save_fasta() determine_long_line -- for determine length of fasta sequence string in user input everywhere: standart long_line=60 -- 70 blocK. sequences _chains: returns sequences in order as in project added monomer pdb_secstr to store secondary structure pdb adding: some improvements and fixes fix in from_pdb_ chain : use all peptides, not only first ... 22 * self.positions -- sorted list of positions of the project.alignment that . ...

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• allpy: bd3d695f9906 lib/project.py
• allpy: lib/block.py annotate
• allpy: b2ec17578145 lib/block.py

Bioinf ormatic analysis of diverse protein superf amilies to design improved enzymes Dmitry Suplatov , Nikolay Panin, Tatyana Shcherbakova, Ilyas Khaliullin, Vytas Svedas Lomonosov Moscow State University, Belozersky Institute of Physicochemical Biology and F aculty of Bioengineering and Bioinformatics ... D. Suplatov, E. Kirilin, V. Takhaveev, V. Svedas (2014) Zebra: web-server for bioinformatic analysis of diverse protein families, J.Biomol.Struct.Dyn., ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/244.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/202.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/217.pdf

Modules | ... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Developer Documentation . ... The new structure is a great deal simpler... module MODULE_VAR_EXPORT module_name _module = { STANDARD20_MODULE_STUFF, /* create per-directory config structures */ /* merge per-directory config structures */ /* create per-server config structures */ /* merge per-server config structures */ /* command handlers */ /* handlers */ /* register hooks */ }; . ...

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Modules | ... Apache HTTP Server Version 2.0 . Apache > HTTP Server > Documentation > Version 2.0 > Developer Documentation . ... The new structure is a great deal simpler... module MODULE_VAR_EXPORT module_name _module = { STANDARD20_MODULE_STUFF, /* create per-directory config structures */ /* merge per-directory config structures */ /* create per-server config structures */ /* merge per-server config structures */ /* command handlers */ /* handlers */ /* register hooks */ }; . ...

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• Definitions and Conventions

Описание вакансии: . ... The project will focus on the structure-property/toxicity studies of different nanomaterials. ... Experience: The background in theoretical QSAR/QSPR and computational chemistry studies is essential. ... следующая вакансия . список всех вакансий . добавить вакансию . редактировать эту вакансию . ...

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Nominal modification at the Syntax-Semantics Interface: comparing attributive adjectives in Italian and English In his seminal work, Bolinger (1967) discusses an asymmetry between two functions that adjectives can perform, namely attributive and predicative modification; furthermore, he points out that the syntactic asymmetry between the pre- and the post-nominal position of a number of adjectives in English is related to a semantic difference between reference- and referentmodification, respectively. ...

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• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/steriopolo.pdf
• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/damonte.pdf
• http://www.philol.msu.ru/~otipl/new/fdsl/abstracts/biskup.pdf

О лаборатории . ... Лаборатория теоретической биофизики . ... System requirements : python 2 (2.6 and higher), python openbabel library, python numpy library. ... The memgen script makes a bilayer membrane from different phospholipids and other lipid compounds (e.g. cholesterol). ... Biochemistry (Moscow) Supplement Series A: Membrane and Cell Biology, 2011, Vol. ... Нет комментариев " Python membrane generator for MD simulations " . ... 2011 ERG Research Group . ...

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... We consider now change-points in different components of the frequency spectrum of typical EEG signal. ... Only few change-points in power are found in the initial EEG (unless a prominent alpha rhythm is present). ... Change-points in different frequency components of the EEG . ... Change-points in different types of the EEG alpha activity without substantial gradual changes . ... As can be seen from Fig. 7.3, the program reliably detected the change-points despite of such variety of signal patterns...

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• Change-points at different levels of the hierarchy of EEG segmental...
• Other prospects of the change-point based analysis
• Nonparametric approaches to the description of EEG piecewise stationary

... Description . Catalog . ... In the Catalog, we publish equatorial (ЮБ 2000 , ЮД 2000 ) and galactic (l,b) coordinates of cluster centers derived as the position of overdensity in 2MASS catalog (Koposov et al. ... Distances, color-excesses and ages are the mean-square values calculated using all available evaluations from different color-magnitude diagrams. ... There are individual pages for every cluster where all available plots and parameters are published. ... 2002). ...

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Next: The Scenario Machine: Operational Up: Evolution of Magnetic Rotators Previous: Ejector-propeller hysteresis . ... The length of this segment is determined by the eccentricity. ... In this case no hysteresis occurs and transitions E -- P and the reverse take place in symmetrical points of the orbit. ... Here EP means a mixed state of the rotator at which it is in the ejector state during one part of the orbit, and in the propeller state during the rest of the orbital cycle. ...

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• AXAF-Chandra
• Space position

Databases (NSDC) of the Natural Planetary Satellites. ... NSDC: Database of astrometric observations of Natural Planetary Satellites . ... They are thoroughly looking for observations in different sources, creating their owndatabases which are then mostly inaccessible to other researchers. ... In the file "content" with explications, the reference is given to the data source as well as the bibliographic reference. ... Data sources. ... Why a specific bibliographic database for Natural satellites? ...

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• IDL programs

This home page belongs to small group of scientists working at . Sternberg Astronomical Institute which is a part of Moscow State University . ... Электронная библиотека научно-технической и художественной литературы (доступна только из ГАИШ) . ... Local staff . Dr. Edward Kononovich (konon -at- sai.msu.ru), Associate Professor . ... Dr. Sergey Ayukov (asv -at- sai.msu.ru), Research Fellow, Webmaster of the group . ... Joint seminar of Solar Studies Structure Group and Solar Photometry Group . ...

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• Dynamic HTML in Communicator
• Lists in HTML documents
• Not so well documented Device Helpers in OS/2

... PbTe, SnTe, GeTe and their solid solutions are narrow-gap semiconductors widely used in infrared optoelectronics and for thermoelectric energy conversion. ... The present work is a continuation of recent EXAFS studies performed at the NSLS on GeTe, SnTe and PbTe crystals doped with high concentration of indium (10-35 at.% ... The studied samples were PbTe, SnTe and GeTe doped with 1.5-2% of indium along two sections (InTe and In 2 Te 3 ) of the phase diagrams. ... Results of data analysis. ...

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• Influence of Se, Pb and Mn impurities on the ferroelectric phase transition in
• EXAFS studies of the interaction of Ge off-center atoms and impurities in GeTe

... Menzerath's Law for Morphemic Structures of Words: . A Hypothesis for the Evolutionary Mechanism of its Arising and its Testing . Anatoliy A. Polikarpov . ... Key words: Menzerath's Law, morphemic structures, language evolution . ... In this paper there is present (1) a hypothesis for understanding the evolutionary mechanism responsible for the Law arising and (2) some data for testing the hypothesis. ... A Hypothesis. ... Altmann, G. Prolegomena to Menzerath's Law//Glottmetrika 2. ...

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• MSU-LGCLL:: Krylov J.K. - On the Nature of Koehler's Effect

Study of jet transverse structure with CMS experiment at 10 TeV Natalia Ilina (ITEP, Moscow) for the CMS collaboration CMS PAS QCD-08-002 (2009) 1 LOMONOSOV09, MSU, Moscow 24/08/2009 Outline 1. ... 7 LOMONOSOV09, MSU, Moscow 24/08/2009 Monte Carlo predictions HERWIG++ Particle level Jet transverse structure for all jets (black lines) depends on while it does not depend on for gluon and quark jets. ...

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