... diff . ... Implemented & tested new markup API. ... line diff . 1.1 --- a/ allpy / base.py Fri Jul 15 13:57:56 2011 +0400 1.2 +++ b/ allpy / base.py Fri Jul 15 16:43:03 2011 +0400 1.3 @@ -101,7 +101,43 @@ 1.4 def __ne__( self , other): 1.5 return not ( self == other) 1.6 1.7 -class Sequence (list): 1.8 +class MarkupContainerMixin(object): 1.9 + Common functions for alignment and sequence for dealing with markups. 1.10 + 1.11 + 1.12 + def _ init ( ...

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• allpy: 3d40d7b9a123 lib/project.py
• allpy: 0905a39738f2 lib/project.py
• allpy: 9b91b49b9ef0 lib/project.py

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... 1) Our CAS system will store the catalogues. ... Each catalogue should contain one or more tables. 2) The names of the catalogues should be unique, as well as the the names of tables of the SAME catalogue. ... 4) All the metadata about the CAS system, its tables, catalogues should reside in separate schema (currently "cas_metadata"). 1) The main system table of CAS is the table "catalog_list". ... short info (column "info") . ... 2) The second system table of CAS is the table "table_list". ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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• MySQL Reference Manual for version 3.23.10-alpha. - 11 The MySQL benchmark...

... Parsimony method . ... It is based on the following principle: the ancestral sequences (posed in nodes of a phylogenetic tree) should be such that the minimal required number of character replacements on the branches of the tree is less than for any other choice of sequences. ... If the preliminary character of the node is * , but the output character of its immediate ancestor is some letter (say, X ), and its set of possible characters contains X , then the output character of the node is also X . ...

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• About this project
• Inquiry information || Distances
• SDP home page

This diagram shows the relationship between a table and a caption to its left and how they behave in the visual formatting model. The diagram shows a table with 3 columns, one row of headers, and six rows of data cells. The table is centered within its containing block, whose left and right edges are depicted by vertical lines and labeled "current margins". ... To the left of the left containing block edge, a right-justified paragraph of five lines is aligned with the bottom of the table. ...

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• Long description of example illustrating table row height calculations and
• Long description of example illustrating rows separated by a border
• Long description for example showing how structurally overlapping cells are

... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/xyz2grd.html
• http://xray.sai.msu.ru/~ivan/gmt/man/spectrum1d.html
• http://xray.sai.msu.ru/~ivan/gmt/man/triangulate.html

... 3.0.4 - 3.0.18 only, PHP 4 >= 4.0.0) imap_fetch_overview -- Read an overview of the information in the headers of the given message . array imap_fetch_overview ( int imap_stream, string sequence [, int flags]) . ... mbox = imap_open("{your.imap.host:143}","username","password") or die("can't connect: ".imap_last_error()); $overview = imap_fetch_overview($mbox,"2,4:6",0); if(is_array($overview)) { reset($overview); while( list($key,$val) = each($overview)) { print $val->msgno . ... val->subject . ...

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• odbc_tables
• imap_mail_move
• odbc_columns

... DCOUNT(database,field,criteria) . DCOUNT function counts the cells that contain numbers in a database that match conditions specified. @database is a range of cells in which rows of related information are records and columns of data are fields. ... If @field is an integer, for example. 2, the second column is used. ... For example, ``Age'' refers to the column with the label ``Age'' in @database range. @criteria is the range of cells which contains the specified conditions. ... Name Age Salary . ...

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• DCOUNTA
• DVARP
• DSTDEVP

... Algorithm & . Format requirements . ... SDPsite is a tool for identification of protein active and other functional sites, based on spatial clustering of SDPs (specificity-determining positions, described here ) with CPs (conserved positions). ... Mapping predictied positions onto structure and construction of the best cluster . ... The input data of the algorithm are a multiple protein alignment divided into specificity groups . ... is called statistical significance of the set of k* positions . ...

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• SDPlight
• SDPpred

... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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• GeneBee BLAST 2.2.22+ Services Help
• GeneBee BLAST 2.2.8 Services Help
• AliComp - GeneBee Alignment Comparison Help

Each row in the Particles Table describes a particle - anti-particle pair. ... 2*Spin for a doubled particle spin: 0 for scalar, 1 for spinor and 2 for vector particles. ... In this case the anti-particle "A+" is transformed by conjugated representation. ... Aux for an auxiliary field which allows to modify particle propagators. ... spin 0 case: . ... Zero mass vector particle must be marked as a gauge one using the Aux field (see below). ... is permitted for vector ( 2*spin=2 ) particle. ...

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... MAST - Motif Alignment and Search Tool . ... The E-value of a sequence is the expected number of sequences in a random database of the same size that would match the motifs as well as the sequence does and is equal to the combined p-value of the sequence times the number of sequences in the database. ... Following the description line(s) is a line giving the length, combined p-value, and E-value of the sequence as defined in Section I. The next line reproduces the motif diagram from Section II. ...

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• UniProt fields
• SwissProt fields

The QKeyEvent class contains parameters that describe a key event. ... QKeyEvent  ( int type, int key, int ascii, int state )  . ... void  accept  ()  . ... Key events occur when a key is pressed or released when a widget has keyboard input focus. A key event contains a special accept flag which tells whether the receiver wants the key. ... Constructs a key event object. ... Sets the accept flag of the key event object. ... Clears the accept flag parameter of the key event object. ...

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• Qt Toolkit - QImageIO Class
• Qt Toolkit - QRegion Class
• Qt Toolkit - QCloseEvent Class

... Instructions are in README.TXT file inside the tarball. ... tar -xvf nhunt_x86.tar Query and database files should contain sequences in FASTA format ( wikipedia description ). ... Default name of the output file is 'nhunt.out'. ... Any parameter consists of key and value and is called as '-key value', where 'key' is one character and 'value' is any number of characters. -i Query file . ... No default value. -d Database file . ... No default value. -o Output file . ... Default value: 'nhunt.out' . ...

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... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

17. http://www.sai.msu.ru/neb/nss/SatStar/expl-J.txt

18. Firefly/PC GAMESS standard MCQDPT2 benchmark results on modern hardware

19. http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/161.pdf

20. http://mirror.msu.net/pub/gentoo-portage/eclass/kde5-functions.eclass