... 6 import sequence . ... 19 * self.alignment -- alignment object, which the block belongs to . ... 22 * self.positions -- list of positions of the alignment.body that . ... 34 def __init__ ( self , alignment , sequences = None , positions = None ): . ... sequences : . ... 75 If more than one pdb chain for some sequence provided, consider all of them . ... 129 alignment_sequence = self . ... 130 return ( alignment_sequence [ i ] for i in self . ... 132 def ca_atoms ( self , sequence , pdb_chain ): . ...

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• allpy: a7eed9c3ab8f allpy/block.py
• allpy: lib/block.py annotate
• allpy: 0586317b3a99 test/usecase1.py

... annotate . ... ksenia_yashina@23 . ... 2 <title> Petri dish </title> . ... 7 Simulation of life inside Petri dish, where hypothetic unicellular organisms move and reproduce. ksenia_yashina@23 . ... 13 <li> Asexual reproduction - division of parent cell, which leads to formation of two identical daughter cells; parent cell disappears; no division occurs if there is not enough space to place daughter cells in dish </li> . ... 24 Number of cells [1-10] - number of cells in dish at start of simulation ....

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• petri_dish: Bacteria.py annotate
• petri_dish: bacteria.py annotate

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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... Criteria of branch quality . As it was repeatedly told , phylogenetic trees consist from branches. ... I. e., those positions, which can separate sequences of the branch from other sequences in the alignment. ... Measure of branch separation . ... Here and further: A - branch of the tree, i , j - sequences of alignment . ... That's why number of conserved positions in some branch should be considered in complex with the distribution of conserved positions in the whole alignment. ...

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• About this project
• Example of supporting positions
• Inquiry information || Parsimony algorithm

A.N. Belozersky Institute . Bioinformatics Portal . ... Russian EMBnet Node . ... AliBee - Multiple alignment Release 2.0 . ... Grants information . ... Our Institute is a scientific department of Moscow State University. ... Address: Belozersky Institute,Moscow State University,Leninskie Gory 1,Bldg. ... Information about our activities and EMBnet resources around the World is available here . Information about our educational activities with kids, children and teenagers is available here . ...

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• Genebee Predicted Annotation
• Genebee Predicted Annotation - Advanced
• OUTPUT

The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• SVETKA, a program for multiple sequence alignments analysis
• Geometrical core

NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...

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• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/27.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/237.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf

RnaViz . RnaViz is a user-friendly, portable, windows-type program for producing publication-quality secondary structure drawings of RNA molecules. Drawings can be created starting from DCSE alignment files if they incorporate structure information or from mfold ct files. The layout of a structure can be changed easily. ... Home Site: . http://rrna.uia.ac.be/rnaviz/ . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ... SAL@KachinaTech.COM . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - PUZZLE
• Sternberg Astronomical Institute
• SAL- Other Scientific Fields - Chemistry, Biology Related - GeneMine

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus
• Nhunt

... Программа повышения квалификации ?Исследование природы вместе с детьми? ... День леса - 2013 . ... Содержание сборника, 2004 . ... из сборника Вместе со всей планетой , Пущино 1995 . ... Загадки и тайны мира природы очень интересны детям, даже самым маленьким. ... В 1995 г. мы вместе с учеными подмосковного города Пущино помогали школьникам выступить в роли экологических наставников для малышей . Заметка об этой работе была опубликована в журнале ЮНЕСКО Connect . ...

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The Isaac Newton Institute (Instituto Isaac Newton) for astronomical research (INI) was founded in 1978 by Gonzalo Alcaino. The main office is located in the eastern outskirts of Santiago (Chile). ... The Moscow branch was the first one established outside Chile. ... Besides the above named branches, the Chilean staff of the Isaac Newton Institute is involved in collaboration with astronomers of the Observatory of Rome in several research projects using data secured from telescopes in Chile. ...

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The QGManager class provides one-dimensional geometry management. ... void  setBorder  ( int b )  . ... bool  add  ( QChain * destination, QChain * source, int stretch = 0 )  . bool  addWidget  ( QChain *, QWidget *, int stretch = 0 )  . bool  addSpacing  ( QChain *, int minSize, int stretch = 0, int maxSize = unlimited )  . bool  addBranch  ( QChain * destination, QChain * branch, int fromIndex, int toIndex )  . ... Widgets are organized in chains, which can be parallel or serial. ...

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• Apache module mod_status
• Qt Toolkit - QBoxLayout Class

... About lab . ... MSU Graphics & Media Lab (Video Group) . The filter is intended for recovering visual quality of video ripped from DVD (for example, when it contains 4 hours of video data), VideoCD or after decompressing by H.261, H.263, H.264, DivX, XviD, etc. The algorithm decreases blocking artifacts, significantly improving visual quality of video. Filter automatically determines the blockiness's strength on the frame and in the certain part of it, preserving the maximum of details. ...

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• Removing of blocking effect from video | Лаборатория компьютерной графики и
• Temporal Post-processing Method for Automatically Generated Depth Maps |

. Участники . Исследования . Телеконференция . English Version | Сотрудники Центра | Партнерство . Оформление сайта . Сохраним природу . Учительская . Обучение . Олимпиада "Ломоносов" . Международное сотрудничество . Сайт поддерживается: . Институтом экологического почвоведения МГУ . Фондом исследования аграрного развития . webmaster@mail .

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• The Ecological Cooperation project is the first large scale childrenтАЩs
• Children's ecological telecommunication project

. Please standby and you will be automatically connected to the new location of the unframed Supernova page. Or, click on the link above. If you have questions or problems, please email me at David Bishop dbishop@vhdl.org . Last modified: Mon Aug 27 12:40:15 EDT 2001

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Welcome , Registration , and other StartingPoints ; TWiki history & Wiki style; All the docs.. ... WikiNotation 2 - 1999-12-14 - PeterThoeny . ... TWiki is linking topics automatically, provided you give a WikiTopic a name that follows the WikiNotation . ... TWiki links topics automatically, provided you give a WikiTopic a name that follows the WikiNotation . ... Uppercase letter(s) . Lowercase letter(s) . ... Note: Please contribute updates to this topic on TWiki.org at TWiki:TWiki.WikiNotation . ...

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• %TOPICTITLE% (4 vs. 5) - TWiki
• WebNotify - _default - TWiki
• %TOPICTITLE% (6 vs. 7) - TWiki

Given word length and max number of mismatches . Use MEME algorithm for define conserved blocks . Apply the Dynamic programming algorithm to create chain of the blocks . Refine the chain using combined profile for chain of blocks. ... Reduce word length and number of mismatches and repeat the procedure for spacer between the blocks. ... Create helix profile and apply MEME-like iterative procedure to find sets of helices that consistent lokated reative to conserved blocks . ...

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• Input Formats
• SDPpred
• SDPsite - Algorithm Format requirements

Описание типа PersonnelRecord . PersonnelRecord ::= [APPLICATION 0] IMPLICIT SET . ... title [0] VisibleString, . ... children [3] IMPLICIT . ... Name ::= [APPLICATION 1] IMPLICIT SEQUENCE . givenName VisibleString, . initial VisibleString, . familyName VisibleString . EmployeeNumber ::= [APPLICATION 2] IMPLICIT INTEGER . Date ::= [APPLICATION 3] IMPLICIT VisibleString . ... Описание значения типа PersonnelRecord . givenName "John", . initial "P", . ...

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• domxml_children
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... News . ... 32-bit Microcontroller Programming . Microcontroller Control of Motors . Second-year students classes . ... Parallel Programming . ... Microcontroller Programming . ... Microcontroller-related . ... Serguey Elizarov . Serguey Zapunidi . ... Alexander Karabutov . ... Serguey Yakovlev . ... We sincerely wish you a Happy New Year and Merry Christmas! We hope that this year has been for you a year of new achievements. ... Happy New Year 2016! ... Hits . ... Written by Pavel . ...

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• Science Festival 2013

... Forty days and forty nights, didn't it rain, children? ... Elementary, my dear, two time two is four. Elementary, my dear, two time three is six. Elementary, my dear, two time four is eight. Elementary, my dear, two time five is ten. ... Elementary, my dear, two time six is twelve. Elementary, my dear, two time seven is fourteen. ... Two times ten is twenty; eleven twice is twenty-two. ... Two times 174 equals two times 100 plus two times 70 plus . ... minus two times two. ...

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• Index of /ftproot/pub/rec/games/Cracks-Solutions-Cheats/Branch
• Image: Children playing with deer. Park near Todai-ji temple.