... files . ... allpy/base.py . ... 1.52 + Sequence = cls. sequence _type 1.53 + not_gap = lambda (i, char): char != - 1.54 + no_gaps = line.replace( - , ) 1.55 + sequence = Sequence (no_gaps, name , description , source) 1.56 + for i, (j, char) in enumerate(filter(not_gap, enumerate(line))): 1.57 + self[j][seq] = sequence [i] 1.58 + self. sequences .append( sequence ) 1.59 + 1.60 + @classmethod 1.61 + def from_fasta(cls, ... 2.6 2.7 - Return a dict of { sequence header: sequence body }. ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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... A regular expression (regex) is a powerful way of specifying a complex search. MySQL uses regular Henry Spencer's inplementation of regular expressions. ... MySQL uses the extended version. This is a simplistic reference that skips the details. To get more exact information, see Henry Spencer's regex(7) manual page that is included in the source distribution. ... A regular expression describes a set of strings. The simplest regexp is one that has no special characters in it. ...

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... It is recommended that all lines of text be shorter than 80 characters in length. An example sequence in FASTA . ... Sequences are expected to be represented in the standard IUB/IUPAC amino acid and nucleic acid codes, with these exceptions: lower-case letters are accepted and are mapped into upper-case; a single hyphen or dash can be used to represent a gap of indeterminate length; and in amino acid sequences, U and * are acceptable letters (see below). ...

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Brain Research Group >> Research >> Change-point analysis ... << previous next >> . ... When detection of the change-points in alpha band power was performed as in the previous subsection, more than one change-point per second was obtained in average. ... The hypothesis of the hierarchy of EEG segmental descriptions (Kaplan 1998) (see subsection 7.3.2) is a theoretical reason for introducing the adjustment of the change-point detection probability. ...

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... PHP 4 >= 4.0.0) addcslashes -- Quote string with slashes in a C style . string addcslashes ( string str, string charlist) . Returns a string with backslashes before characters that are listed in charlist parameter. It escapes \n , \r etc. in C-like style, characters with ASCII code lower than 32 and higher than 126 are converted to octal representation. ... Also, if the first character in a range has a lower ASCII value than the second character in the range, no range will be constructed. ...

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... При сравнении поисковых систем я обнаружила, что наибольшую степень сходства имеют две: MRS, SRS. ... D-ribose-binding periplasmic protein . swissprot-Description:D-ribose*] [swissprot-Description:-binding*]) [swissprot-Description:periplasmic*]) [swissprot-Description:protein*])| [swissprot-Description:D-ribose-binding periplasmic protein*]) [swissprot-Taxonomy:gammaproteobacteria*]) . ... swissprot-Description:D-ribose-binding periplasmic protein*] [swissprot-Taxonomy:gammaproteobacteria*]) . ...

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... x264 is an open source codec of standard MPEG4 AVC/H.264, developed by programmers from all over the world. ... Accumulated during previous frames' compressions statistic is actively used by codec to improve effectiveness of adaptive models. ... These parameters are used only before encoding start, so, our improvements are more significant for short sequences. ... 3 Results of codec x264 modification on "flower" sequence . ... 5 Results of codec x264 modification on "flower" sequence, low bitrates ....

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... Plugin Installation Instructions . ... WikiRing Consultants This plugin will help you to write readable markup (TWikiMarkup, HMTL, ...) within TWiki by allowing tags and arguments to be formatted on multiple lines. ... Basically, there are two ways of glueing and recombining lines by either removing all whitespaces between two lines using %*~~ or by removing all whitespaces and separateing lines with a single space using %~~~ . ... lib/TWiki/Plugins/GluePlugin.pm . ... TWiki:Plugins/GluePlugin . ...

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Some additional inquiry information . ... Rule of fours . The sequences in alignment can be casual. ... But we can tell, that the more the alignment tries to satisfy the rule of fours, the better it is. ... But, according to the rule of fours, we can take 3 sums of distances between sequences (there are six distances: |AB|, ... The more is the meaning of this parameter, the more exactly the rule or fours is satisfied, and, hence, the better the considered alignment is. ...

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• Inquiry information || Distances
• Inquiry information || Parsimony algorithm

... Proposed directory for placement: /pub/os2/apps/graphics Your name: Gianfilippo Cimmino Email address: gianfli dot cim at gmail dot com Program contact name: (same) Program contact email: (same) Program URL: http://www.graphicsmagick.org/ Would you like the contact email address included in listings? yes Operating System/Version: OS/2 Warp 4.5 or eCS Additional requirements: GCC runtime (0.6.6), GCC Core (1.3.0) Replaces: ...

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. Nhunt: program for nucleic acid sequence similarity search . Download . User manual . Application examples . License . News . About . Authors publications . Contacts . Web interface . At present you can download poster from MCCMB'11 conference and my term work (in Russian) with description of main program algorithms. Funding: Ministry of Education and Science of the Russian Federation (State Contract No. 07.514.11.4006). Copyright 2010-2011 Yury Pekov

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... Quaternary research centre, University of Novi Sad, Trg D. Obradovi?a 3, 21000 Novi Sad, Serbia and Montenegro . This short communication highlights importance of our excursion area to loess research in Europe, beginning with the work of Luigi Ferdinando Marsigli (figure 1). ... Marsigli’s observations of loess-paleosol sequences was published one century before pioneering work of von Leonard’s (1823/1824) about characterization of loess deposits (Zoeller Semmel, 2001). ...

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... It interpolates the grid at the positions in the table and writes out the table with the interpolated values added as a new column. A bicubic [Default] or bilinear [ -Q ] interpolation is used, requiring boundary conditions at the limits of the region (see -L flag option). xyfile This is an ASCII [or binary, see -b ] file where the first 2 columns hold the (x,y) positions where the user wants to sample the 2-D data set. ... Default is 2 input columns]. -bo Selects binary output. ...

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• http://xray.sai.msu.ru/~ivan/gmt/man/gmtconvert.html
• http://xray.sai.msu.ru/~ivan/gmt/man/pstext.html
• http://xray.sai.msu.ru/~ivan/gmt/man/grd2xyz.html

... Siberian Lang . Minority languages of Siberia as our cultural heritage . ... The project ?Development of the web-site ?Minority languages of Siberia as our cultural heritage? (on the material of the languages of the basin Middle Yenisei and the Middle and the Upper Taz)? was realized at the Laboratory for Computational Lexicography, Research Computing Centre, Lomonosov Moscow State University, with financial support from Russian Foundation for the Humanities, grant 12-04-12049.љ ...

16. Multiparameter Stability Theory with Mechanical Applications

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20. http://mirror.msu.net/pub/gentoo-portage/sci-biology/mira/mira-4.0.2.ebuild