... 1 from allpy import protein . ... 3 # Create sequences from string representation of sequence body . 4 sequence_1 = protein . ... 7 # Create alignment from sequences . 8 alignment = protein . ... 13 # For each sequence, print number of gaps and non-gaps in alignment . ... 17 for column in alignment . ... 22 print " %s : %s gaps, %s non-gaps" % ( row . ... 24 # Print number of gaps in each column . ... 27 column_gaps = 0 . 28 for sequence in alignment . ... 29 if sequence not in column : . ...

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• allpy: 50633fcbbdc4 allpy/block.py
• allpy: test/test.py annotate
• allpy: allpy/rna.py annotate

SVETKA, a program for analysis of different alignments . Back to the help page . ... Such a feature can look like " Leucine in the position 362 of the alignment of the entire family " and can, in many cases, be a "decision rule" to distinguish sequences from two sides of a tree branch. ... Comparing the alignment with an input tree (the tree may be entered by the user or reconstructed with the WPGMA algorithm), the program detects supporting positions of the alignment for every branch the tree. ...

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• About authors ot this complex
• Example of supporting positions
• ETS sequence conservation

Электронная библиотека Попечительского совета . ... Althaus E. - A branch-and-cut algorithm for multiple sequence alignment . ... Название: A branch-and-cut algorithm for multiple sequence alignment . Автор: Althaus E. Язык: . ... Электронная библиотека попечительского совета мехмата МГУ , 2004-2016 . ...

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The files containing information about Affymetrix microarrays were downloaded from the official Affymetrix site. ... Probe sequences were mapped to the genome using Blat. ... The hits found "probe alignment regions" were . ... We annotated each probe alignment region using the mRNA and EST alignments provided by UCSC, considering only . ... The textual part of the interface consists of probe information section, probe alignment section and transcription state . ... Each gene and each probe alignment . ...

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• SVETKA, a program for multiple sequence alignments analysis
• Geometrical core

NGS Data Analysis with Unipro UGENE Olga Golosova, Yuriy Vaskin, German Grekhov, Yuliya Algaer UNIPRO, Lavrentieva ave. ... That is where Unipro UGENE NGS framework comes in play. ... Moreover, the UGENE toolkit allows one to automate common tasks by creating workflows with the integrated tools using the UGENE Workflow Designer. Analysis of NGS data with UGENE may start, for example, from quality control of raw NGS data, received from a sequencing facility, with the integrated FastQC [3] tool. ...

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• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/215.pdf
• http://mccmb.belozersky.msu.ru/2013/abstracts/abstracts/216.pdf
• http://mccmb.belozersky.msu.ru/2015/proceedings/abstracts/27.pdf

Home page . ... GeneBee . ... A4 - Genebee Adaptive Automated Annotation . ... Home . Advanced query . Annotation title . ... ITA[1,1] ITA[0,1] USUAL . Additional output . ... NRAS_1 MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM . ... Last updated: December 23, 2008. ...

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• Genebee Predicted Annotation - Advanced
• OUTPUT
• Phylogenetic tree

... Query: E. coli K12 tRNA (valV, selC, asnV, leuT, argZ from EMBL entry U00096 ) . ... BLASTN (both) | ... Nhunt . ... BLASTN (optimal): 3.5 s . BLASTN (default): 0.8 s . ... Nhunt: 7 s The program Nhunt surpass all other tested programs in sensitivity. ... Nhunt BLASTN (optimal): 2.9 s . ... Nhunt: 3.7 s BLASTN with default parameters actually cannot find any significant homologues. ... Nhunt-3: 1.7 s BLASTN with default parameters actually cann't find any significant homologues. ...

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• ConClus
• Nhunt

... 5 def __init__ ( self , position , velocity , lifetime , mutated ): . ... 11 def check_collision ( self , bacteria , delta , bact_r ): . ... 33 def asexual ( self , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 38 def sexual ( self , other , bacteria , delta_t , radius , delta , bact_r , full_lifetime ): . ... 41 def find_place_a ( self , bacteria , delta , bact_r ): #searches for place for children . ... 48 def find_place_s ( self , other , bacteria , delta , bact_r ): . ...

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• petri_dish: scale.py annotate
• petri_dish: Petri.py annotate

GRS . GRS is a graphic tool for retrieval and visualization of genome segments from partially or completely sequenced genomes. To facilitate visual identification of conserved genomic motifs, genes are color-coded according to their presumed functional roles. ... The gene string analysis option of GRS allows the identification of genes that are identically arranged in any pairwise set of genomes. ... None . ... SAL Home | Other Scientific Fields | Chemistry, Biology Related . ...

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• SAL- Other Scientific Fields - Chemistry, Biology Related - PHYLO_WIN
• SAL- Other Scientific Fields - Chemistry, Biology Related - RnaViz
• SAL- Other Scientific Fields - Chemistry, Biology Related - Evalign

The Isaac Newton Institute (Instituto Isaac Newton) for astronomical research (INI) was founded in 1978 by Gonzalo Alcaino. The main office is located in the eastern outskirts of Santiago (Chile). ... The Moscow branch was the first one established outside Chile. ... Besides the above named branches, the Chilean staff of the Isaac Newton Institute is involved in collaboration with astronomers of the Observatory of Rome in several research projects using data secured from telescopes in Chile. ...

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• Post main sequence stars (stage II)
• Seminars

... SDPfox - the software package for the prediction of functional specificity groups and amino acid residues that determine the specificity using MPA. ... Amino acid residues that determine differences in protein functional specificity and account for correct recognition of interaction partners, are usually thought to correspond to those positions of a protein multiple alignment, where the distribution of amino acids is closely associated with grouping of proteins by specificity. ...

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• RNA Alignment
• Input Formats
• SDPpred

Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ EAPI=5 inherit eutils MY_P = ${PN}V${PV} DESCRIPTION= Fast multiple sequence alignments using partial-order graphs HOMEPAGE= http://bioinfo.mbi.ucla.edu/ poa / SRC_URI= mirror://sourceforge/poamsa/${ MY_P }.tar.gz # According to SF project page ...

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• http://mirror.msu.net/pub/slackware-current/slackware/tcl/expect-5.45-i586-1.txt
• http://mirror.msu.net/pub/gentoo-portage/sci-biology/diya/diya-1.0_rc4.ebuild
• http://mirror.msu.net/pub/rfc-editor/rfc-ed-all/ien/ien74.txt

... News . ... 32-bit Microcontroller Programming . Microcontroller Control of Motors . Second-year students classes . ... Parallel Programming . ... Microcontroller Programming . ... Microcontroller-related . ... Serguey Elizarov . Serguey Zapunidi . ... Alexander Karabutov . ... Serguey Yakovlev . ... We sincerely wish you a Happy New Year and Merry Christmas! We hope that this year has been for you a year of new achievements. ... Happy New Year 2016! ... Hits . ... Written by Pavel . ...

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• Parallel Programming

... Riverbeds and Lakebeds Discovered on Saturn's Titan . ... Credit: ESA , NASA , Descent Imager/Spectral Radiometer Team ( LPL ) Explanation: Methane rain, evaporating lakes, flowing rivers, and water ice-volcanoes all likely exist on Saturn's moon Titan, according to preliminary analyses of recent images taken by the successful Huygen's lander . ... Both the riverbed and lakebed were thought to be dry at the time the image was taken but contained a flowing liquid - likely methane - in the recent past...

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• Journal "Peremennye Zvezdy"
• Астронет > Riverbeds and Lakebeds Discovered on Saturn's Titan
• Four X-class Flares

... Previous message: [Comphep-common] Re: $COMPHEP/genEvents . Next message: [Comphep-common] Re: a bug in comphep b76i (windows version) . Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] . Dear COMPHEP experts, Is it possible to evaluate width and branching ratios for a 1->2 process (for example ~1+ -> 2*x) in batch mode? I need these values as inputs to perform further batch calculations, Thanks a lot for your help. ...

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• Phase space functions
• [Comphep-common] Re: $COMPHEP/genEvents

... Geography of World Economy . ... Recreational Geography and International Tourism . ... Physical Geography and Landscape Science . ... About Faculty . ... Research laboratories . ... Type of field courses . ... Specialists of the same profile graduate from the branches of the Faculty, located in Sevastopol (Ukraine) and Astana (Kazakhstan). ... International programme in Natural Resource Management and Law offers a unique combination of Natural and Environmental Sciences and Science of Law. ...

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List of Publications . ... Palyulin V.V., Potemkin I.I. Article " Microphase Separation in Melts of Double Comb Copolymers ", Polymer Science, Ser. ... Palyulin V.V., Potemkin I.I., Microphase separation of double-grafted copolymers (centipedes) with gradient, random and regular sequence of the branch points , Journal of Chemical Physics, 2007 , 127, 124903. ( download ) . ... Palyulin V.V., Potemkin I.I., "Microphase separation in double comb copolymer melts , . ... Palyulin V.V., Potemkin I.I., " . ...

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• SHORT ANNOTATION AND MAIN RESULT
• Seminar in Polymer Physics

... 1 Концепция политики разработки дистрибутивов ALT Linux . ... Бранч ? ... Предлагается осуществлять следующую политику сопровождения бранча и создания дистрибутивов в ALT Linux: . Бранч для разработки "development branch" создается путем копирования Sisyphus в определенное время (в сентябре и марте), полгода идет к стабилизации. ... В это самое время мейнтернеры могут самостоятельно размещать в бранч для разработки свои новые и исправленные пакеты, также не забывая размещать их и в Sisyphus. ...

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• Index of /static/AltlinuxOrg_Branches_ReleasePolicy
• PspoMaterials/AltlinuxOrg_Branches_ReleasePolicy - UNИX
• Index of

... Results . ... The main results of 2004 were the comparative analysis of genetic diversity of populations of saiga (Saiga tatarica). ... Molecular-genetic diversity and phylogeographic structure of moose population (Alces alces) in the different regions of European part of Russia and Ural were also studied. ... This testifies enough lengthy migrations of moose within the studied region and genetic unity of moose of Europe and Ural. ... Low genetic diversity of this species was determined. ...

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• Biological Stations: Saratov Biological Station: Goals and Tasks
• Biological Stations of SIEE RAS
• Фундаментальная экология: SCIENTIFIC PRINCIPLES OF BIODIVERSITY CONSERVATION

Pod-Moscowny . Moscow-Regional) . Branch . ... Moscow State University . Page in Russian . Moscow-Regional Branch of M.V.Lomonosov Moscow State University was founded in 1996 in Chernogolovka , town for science and education, placed in 40 km to the North-East from Moscow-city border. Chernogolovka today is considered to be one of the most important Russian scientific and educational centers in physics and chemistry . ... Branch of Moscow State University, . ... Russian Federation . ...

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• International Olympiad of Euro-Asian Astronomical Society
• II International Olympiad of Euro-Asian Astronomical Society