... base.Alignment.process: added parameters to control what to copy also, cleaned up code . ... allpy/base.py . ... 1.1 --- a/allpy/base.py Mon Jan 31 18:44:23 2011 +0300 1.2 +++ b/allpy/base.py Mon Jan 31 19:12:05 2011 +0300 1.3 @@ -318,7 +318,7 @@ 1.4 del column[sequence] 1.5 1.6 def _merge(self, dst, new, merge): 1.7 - """Replace contents of dst with those of new. 1.8 + """Replace contents of `dst` with those of `new`. ... 1.33 + """Replace column contents with those of `new` alignment. ...