... allpy.base: add alignment (old version) . ... allpy/base.py . ... 1.61 + # First, calculate percentages of amino acids in every column 1.62 + contribution = 1.0 / len (self. sequences ) 1.63 + all_columns = [] 1.64 + for position in range( len (self)): 1.65 + column _percentage = {} 1.66 + for seq in self.body : 1.67 + if self.body [seq][position] is not None : 1.68 + aa = self.body [seq][position].code 1.69 + else: 1.70 + aa = None 1.71 + if aa in allpy .data.amino_acids: 1.72 + if aa in...