... annotate . ... Fixed bugs & refactored base.Alignment.process & it's helpers - there were a few name errors - process would previously behave bad if new alignment was shorter - refactored and simplified code for copying sequence contents . ... me@328 . 10 class Monomer ( object ): . ... 71 def __repr__ ( self ): . ... 72 return '<Monomer %s >' % self . ... 154 def append_sequence ( self , sequence ): . ... 400 def from_alignment ( cls , alignment , sequences = None , columns = None ): . ...