Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~smivic/Projects/Term_3/Downloads/gluq_pm.blast Дата изменения: Wed Oct 28 18:15:03 2009 Дата индексирования: Mon Nov 23 23:14:13 2009 Кодировка:

TBLASTN 2.2.21 [Jun-14-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= GLUQ_ECOLI P27305 Glutamyl-Q tRNA(Asp) synthetase (Glu-Q-RSs)
(6.1.1.-)
(298 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE006152 Pasteurella multocida subsp. multocida str. Pm70 sectio... 152 2e-38
AE006088 Pasteurella multocida subsp. multocida str. Pm70 sectio... 46 2e-06

>AE006152 Pasteurella multocida subsp. multocida str. Pm70 section 119
of 204 of the complete genome.
Length = 10531

Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/300 (35%), Positives = 155/300 (51%), Gaps = 16/300 (5%)
Frame = -2

Query: 9 RFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYG 68
RFAPSP+G LH G AL S+L A+ QG +++RIED D R P A IL +
Sbjct: 10074 RFAPSPTGYLHVGGARTALYSWLYAKHHQGEFVLRIEDTDLERSTPEATAAILEGMAWLN 9895

Query: 69 LHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGI---------YDGHC 119
L W+ +Q++R D Y + + + EQGL+Y C C++ R++ + YD HC
Sbjct: 9894 LAWEHGPYFQTKRFDRYNQVIDQMIEQGLAYRCYCSKERLEDLRNTQEQNKQKPRYDRHC 9715

Query: 120 RVLH-HGPDNAAVRIRQQHPV---TQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLA 175
H H P+ V +R ++P F D +RG I +D II R DG YN
Sbjct: 9714 LGDHKHSPEQPHV-VRFKNPTEGSVVFEDAVRGRIEISNA-ELDDLIIRRTDGSPTYNFC 9541

Query: 176 VVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHA 235
VVVDD G+T +VRG D I T RQI++ + G +P Y H+ + L G KLSK++ A
Sbjct: 9540 VVVDDWDMGITHVVRGEDHINNTPRQINILKALGAPIPTYAHVSMILGDDGQKLSKRHGA 9361

Query: 236 PALPK-GDPRPVLIAALQFLGQQAEAHWQD--FSVEQILQSAVKNWRLTAVPESAIVNST 292
++ + D + A L +L + H FSVE++ +K + L +V +SA +T
Sbjct: 9360 VSVMQYRDDGYLPEALLNYLVRLGWGHGDQEIFSVEEM----IKLFELESVSKSASAFNT 9193


>AE006088 Pasteurella multocida subsp. multocida str. Pm70 section 55
of 204 of the complete genome.
Length = 10637

Score = 46.2 bits (108), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +2

Query: 9 RFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYG 68
RF P P+G LH G + ++ A QG +R +D +P +E ++I + +E G
Sbjct: 3014 RFPPEPNGYLHIGHAKSICLNFGIAEDYQGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLG 3193

Query: 69 LHWDGDVLWQSQRHDAYREALAWLHEQGLSY 99
W+G+ + S D L E+GL+Y
Sbjct: 3194 FKWEGEPRYASDYFDQLYGYAIELIEKGLAY 3286


Database: pm
Posted date: Oct 28, 2009 6:14 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
0.322 0.138 0.434

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 839,224
Number of extensions: 13618
Number of successful extensions: 66
Number of sequences better than 1.0e-03: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 756,529
Length adjustment: 81
Effective length of query: 217
Effective length of database: 740,005
Effective search space: 160581085
Effective search space used: 160581085
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)