Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~podkovkina/res2.file Дата изменения: Sat Mar 1 16:17:38 2008 Дата индексирования: Mon Oct 1 20:00:47 2012 Кодировка:

########################################
# Program: needle
# Rundate: Sat 1 Mar 2008 16:26:16
# Commandline: needle
# [-asequence] ABCDEF.fasta
# [-bsequence] ae003852.fasta
# [-outfile] res2.file
# Align_format: srspair
# Report_file: res2.file
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: D87842
# 2: AE003852
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2528
# Identity: 1832/2528 (72.5%)
# Similarity: 1832/2528 (72.5%)
# Gaps: 223/2528 ( 8.8%)
# Score: 6472.5
#
#
#=======================================

D87842 1 atgtcgaattcttatgactcctccagtatcaaagtcctgaaagggctgga 50
||||||||...|||.||.||.||.|||||.||.||.|||||.||.|||||
AE003852 1 atgtcgaacaattacgattcatcgagtattaaggtactgaagggtctgga 50

D87842 51 tgcggtgcgtaagcgcccgggtatgtatatcggcgacacggatgacggca 100
||||||.||.|||||.|||||||||||.|||||||||||.|||||.||||
AE003852 51 tgcggtacgcaagcgtccgggtatgtacatcggcgacactgatgatggca 100

D87842 101 ccggtctgcaccacatggtattcgaggtggtagataacgctatcgacgaa 150
|||||||||||||||||||.||.||||||||.||||||.|.||.||.|||
AE003852 101 ccggtctgcaccacatggtttttgaggtggtggataactcaattgatgaa 150

D87842 151 gcgctcgcgggtcactgtaaagaaattatcgtcaccattcacgccgataa 200
|||.|.||.|||.||||||||||.||..|.||||||||.||||..||.||
AE003852 151 gcgttggcaggttactgtaaagacatcgtggtcaccatccacgaagacaa 200

D87842 201 ctctgtctctgtacag-gatgacgggcgcggcattccgaccggtattcac 249
|||.||.||.|| ||| ||||||||.||.||.||.|||||||..||.||.
AE003852 201 ctcagtgtcagt-cagcgatgacggtcgtggtatcccgaccgaaatgcat 249

D87842 250 ccggaagagggcgtatcggcggcggaagtgatcatgaccgttctgcacgc 299
||.||||||...||.||.|||||.|||||.||||||||.||.||||||||
AE003852 250 cctgaagagaaagtgtctgcggcagaagtcatcatgactgtactgcacgc 299

D87842 300 aggcggtaaatttgacgataactcctataaagtgtccggcggtctgcacg 349
.|||||||||||||||||.||||||||||||||.|||||.||||||||||
AE003852 300 cggcggtaaatttgacgacaactcctataaagtctccggtggtctgcacg 349

D87842 350 gcgttggtgtttcggtagtaaacgccctgtcgcaaaaactggagctggtt 399
|.||.|||||.|||||.||.|||||.||.||..||||| |.||||.||
AE003852 350 gggtaggtgtgtcggtggttaacgcgctttctgaaaaa---gtgctgctt 396

D87842 400 atcc----agcgcgagggtaaaattca-ccgtcagatctacgaacacggt 444
| || |.||.|..||.||.||.|| .|| ||.|..|||.|.||.|||
AE003852 397 a-ccatttatcgtggtggcaagatccattcg-caaacttaccatcatggt 444

D87842 445 gtaccgcaggccccgctggcggt--taccggcgagactgaaaaaaccggc 492
||.||.||.||.|||.||||.|| || ||.|||||.||....|||||.
AE003852 445 gtgccacaagcaccgttggctgtggta--ggtgagacagagcgtaccggt 492

D87842 493 accatggtgcgtttctggcccag-cctcgaaaccttcaccaatgtgaccg 541
||.|..||.|||||||||||.|| .|.| |.||.||.|||||| |.||
AE003852 493 actaccgtacgtttctggcctagtgcac-agacttttaccaat---atcg 538

D87842 542 agttcgaatatgaaattctggcgaaacgtctgcgtgagttgtcgttcctc 591
|.|||.|.||.||.|||.||||.|||||.|||||||||.||||.|||||.
AE003852 539 aattccattacgacattttggctaaacgcctgcgtgagctgtcattcctg 588

D87842 592 aactccggcgtttccattcgtctgcgcgacaagcg---cgacggcaaaga 638
|||||.|||||.||.||....|||..|||..|.|| .||.|..|||.|
AE003852 589 aactctggcgtgtcgatcaagctgaccgatgaacgtgaagaagataaaaa 638

D87842 639 agaccacttccactatgaaggcggca-tcaaggcgttcgttgaatatc-- 685
||||||||||...||||||||.||.| |||| |||||.| ||| |
AE003852 639 agaccacttcatgtatgaagggggtattcaa-gcgtttg-tga----ccc 682

D87842 686 ---tgaacaagaacaaaacgccgatccacccgaatatcttctacttct-- 730
|||||...|||||||||||.|||||...|||..|||||.|||| |
AE003852 683 acttgaaccgtaacaaaacgccaatccatgagaaagtcttccactt-taa 731

D87842 731 ccactgaaa-----aagacggtattggcgtcgaagtggcgttgcagtgga 775
||| |.| ||||.||.||..||||.||||||||..|||||||||
AE003852 732 cca---agagcgtgaagatggcatcagcgtggaagtggcaatgcagtgga 778

D87842 776 acgatggcttccaggaaaacatctactgctttaccaacaacattccgcag 825
|||||||.|||||.||||||||||||||||||||.||||||||.||.|||
AE003852 779 acgatggtttccaagaaaacatctactgctttactaacaacatcccacag 828

D87842 826 cgtgacggcggtactcacctggcaggcttccgtgcggcgatgacccgtac 875
|||||.||.|||||.|||.|.||.||.|||||||..|||.||||||||||
AE003852 829 cgtgatggtggtacccacttagccggtttccgtggtgcgttgacccgtac 878

D87842 876 cctgaacgcctacatggacaaagaaggctacagcaaaaaagc-caaagtc 924
..|||||..||||||||||||||||||||.|...||.||||| ||
AE003852 879 tttgaacaactacatggacaaagaaggcttctcgaagaaagcgca----- 923

D87842 925 agcg----ccaccggtgacgatgcgcgtgaaggcctgattgcggtcgttt 970
|||| ||.|.|||||.|||||||||||||||.|.|..||.||.||||
AE003852 924 agcggcaacctcgggtgatgatgcgcgtgaaggcttaacggcagtggttt 973

D87842 971 ccgtgaaagtgccggacccgaaattctcctcccagaccaaagacaaactg 1020
|.||||||||||||||.||.||||||||...|||.||||||||.||.|||
AE003852 974 cggtgaaagtgccggatcctaaattctcaagccaaaccaaagataagctg 1023

D87842 1021 gtttcttctgaggtgaaatcggcggttga-acagcagatgaacgaactgc 1069
||||||||.||.||.|||||.|||||||| .|||| .|||||.||...||
AE003852 1024 gtttcttcggaagtaaaatccgcggttgagtcagc-catgaatgagaagc 1072

D87842 1070 tggcagaatacct-gctggaaaacccaaccgacgcgaaaatcg-tggttg 1117
||||.||.|.||| || |||||||||||.|||.|||||||.|| |.|||.
AE003852 1073 tggcggatttcctagc-ggaaaacccaagcgaagcgaaaaacgtttgttc 1121

D87842 1118 gcaaaattatcgatgctgcccgtgcccgtgaagcggcgcgtcgcgcgcgt 1167
| ||.|||||.|||||.||.|||||.|||||||||||||||...||.||.
AE003852 1122 g-aagattattgatgcggcgcgtgcgcgtgaagcggcgcgtaaagcccgg 1170

D87842 1168 gaaatgacccgccgtaaaggtgcgctcga-cttagcgggcctgccgggca 1216
||||||||.|||||||||||.|||||.|| ||| ||.|||.|.||.||||
AE003852 1171 gaaatgactcgccgtaaaggcgcgctggatctt-gctggcttacccggca 1219

D87842 1217 aactggcagactgccaggaacgcgatccggcgctttccgaactgtacctg 1266
|||||||.||.||.||||||...||.||.||..|.||.|||||.|||.|.
AE003852 1220 aactggcggattgtcaggaaaaagacccagcattgtctgaactctacata 1269

D87842 1267 gtggaaggggactccgcgggcggctctgcgaagcagggcggtaaccgcaa 1316
|||||.||.|||||.||||||||.||.||.||.||.|||.|||||||.||
AE003852 1270 gtggagggtgactcagcgggcggttcagccaaacaaggccgtaaccgtaa 1319

D87842 1317 gaaccaggcgattctgccgctgaagggtaaaatcctcaacgtcgagaaag 1366
|||.||.|||||||||||||||||.|||||||||||||||||.||.||||
AE003852 1320 gaatcaagcgattctgccgctgaaaggtaaaatcctcaacgtagaaaaag 1369

D87842 1367 cgcgcttcgataagatgctctcttctcaggaagtggcgacgcttatcacc 1416
||||.||.||.||||||.|.|||||.||.|||||.|||||.||.|||||.
AE003852 1370 cgcgttttgacaagatgttgtcttcacaagaagtcgcgaccctcatcact 1419

D87842 1417 gcgcttggctgtggtatcggtcgtgacgagtacaacccggacaaactgcg 1466
||..|.||||||||||||||.|||||.|||||||||||.||.||||||||
AE003852 1420 gcattaggctgtggtatcggccgtgatgagtacaacccagataaactgcg 1469

D87842 1467 ttatcacagcatcatcatcatgaccgatgcggacgtcgacggctcgcaca 1516
||||||||.|||||||||||||||||||||||||||||||||||||||||
AE003852 1470 ttatcacaacatcatcatcatgaccgatgcggacgtcgacggctcgcaca 1519

D87842 1517 ttcgtacgctgctgttgaccttcttctatcgtcagatgccggaaatcgtt 1566
|||||||.||||||||||||||.|||||.||.||.|||||.||..|..||
AE003852 1520 ttcgtactctgctgttgacctttttctaccgccaaatgcctgagttgatt 1569

D87842 1567 gaacgcggtcacgtctatatcgctcagccgccgctgtacaaagtgaagaa 1616
||.||.|||.||.||||.||.||||||||.||.|||||.|||||||||||
AE003852 1570 gagcgtggttacatctacattgctcagccaccactgtataaagtgaagaa 1619

D87842 1617 aggcaagcaggaacagtacattaaagacgacgaagcgatggatcagtacc 1666
||||||.||.||.||||||||.|||||.||.||.||||||.|.|||||||
AE003852 1620 aggcaaacaagagcagtacatcaaagatgaagaggcgatgaaccagtacc 1669

D87842 1667 agatctctatcgcgctggacggcgcaacgctgcacaccaacgccagtgca 1716
|..|..|..|.|||.||||.||.|||..|||||||...||.|||..|||.
AE003852 1670 aagtggcactggcgatggatggtgcagagctgcacgtgaatgccgatgcg 1719

D87842 1717 ccggcattggctggcgaagcgttagagaaactggtatctg-agtacaacg 1765
||.||.||.||.||.|||.||.|.|||||.||||| ||.| |.||.||||
AE003852 1720 ccagcgttagcgggtgaaccgctggagaagctggt-tcagcaatataacg 1768

D87842 1766 cgacgcagaaaatgatca---------atcgtatggag-cgtcgttatcc 1805
| ||| ||||| |.||.|| ||| ||.|||||.||
AE003852 1769 c--cgc-------gatcaagctggttgagcgcat-gagccgccgttaccc 1808

D87842 1806 gaaagcaatgctgaaagagcttatct-----------atca--gccgacg 1842
..|.||.||||||.|.|||||.||.| |||| ||||
AE003852 1809 ttacgcgatgctgcatgagctgatttacgtaccacgcatcaatgccg--- 1855

D87842 1843 ttgacggaagctgacctttctgatgagcagaccgtt--acccgctgggtg 1890
||||| ||.||.|| | |.|||| ||.||
AE003852 1856 --------agctg----------tgtgcgga----taaagccgc-ggttg 1882

D87842 1891 aacgcgc-tggtca----------gcgaac---tgaacgacaaagaacag 1926
|| || |||.|| .||||| ||||.|..||||||..|
AE003852 1883 aa---gcttggacacagcgtttagtcgaacagttgaatgctaaagaagtg 1929

D87842 1927 cacggcagcca----------gtggaagtttgatgttcacaccaatgctg 1966
...|..||||| .||| |||| ||| ||||||||
AE003852 1930 ggtgcgagccaatacagcgttctgg----ttga-----aca-caatgctg 1969

D87842 1967 agcaaaacctgttcgagccgattgttcgcgtgcgtacccacggtg----- 2011
|||..||..|||.|..|||.|...|||..||||||||.|||||||
AE003852 1970 agctgaatgtgtacttgccaaaaattcaggtgcgtactcacggtgtgact 2019

D87842 2012 --tggatactgactatccgctggatc------------acgagtttatca 2047
||.|||||.|||...||| ||||| |.|||| |
AE003852 2020 catgaatacttactgagcgc-ggatctgatcaactcgaaagagt-----a 2063

D87842 2048 ccggtggcgaatatcgtcgtatctg-----cacgctgggtgagaaactgc 2092
| ||.||..|.|.|| ||||| ..|||||| ||
AE003852 2064 c-----gctaagttagccg-atctgtcggaagcgctgg-------ac--- 2097

D87842 2093 gtggcttgctggaagaagatgcgtttatcgaacgtggcgagcgtcgt-ca 2141
||.|||.|.||||..|..|||||||||.|||||||.||||| .|| ||
AE003852 2098 --ggtttgattgaagcgggagcgtttatcaaacgtggtgagcg-agtaca 2144

D87842 2142 gccggt-agccagcttcgagcag--gcgctggactggctggtgaaagagt 2188
.|||.| || |||||| .||.| ||||||||.||||||.|.|||||||
AE003852 2145 accgatcag-cagctt--tgccgccgcgctggattggctgatcaaagagt 2191

D87842 2189 cccgtcgcggcctctccatccagcgttataaaggtctgggcgagatgaac 2238
|.||.|||||.||.||.|||||.||.|||||||||||||||||.||||||
AE003852 2192 cgcgccgcggtctgtctatccaacgctataaaggtctgggcgaaatgaac 2241

D87842 2239 ccggaacagctgtgggaaaccactatgga-cccggaacgttgtcgtatgc 2287
||.||.||||||||||||||.||.||||| ||.|.|||| .||||||||.
AE003852 2242 cctgatcagctgtgggaaactacgatggatccagaaacg-cgtcgtatga 2290

D87842 2288 tgcgcgttaccgttaaagatgcgattgctgccgaccagttgttcaccacg 2337
|||..||.||..|..||||||||.|.|..||.|||.|..|||||||.|||
AE003852 2291 tgcaagtcactatcgaagatgcggtaggcgcggacgaactgttcacgacg 2340

D87842 2338 ctgatgggcgacgccgttgaaccgcgccgtgcgtttattgaagagaacgc 2387
||.||||||||....||||||||.||.|||||.|||||.|||...|||||
AE003852 2341 ctcatgggcgatcaagttgaaccacgtcgtgcatttatcgaaaccaacgc 2390

D87842 2388 cctgaaagcggcgaatatcgatatttaa 2415
.|||||||.|||.||..||||..|.|||
AE003852 2391 actgaaagtggccaacctcgacgtataa 2418


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