Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~element/Term3/results.txt Дата изменения: Thu Nov 8 19:04:49 2007 Дата индексирования: Mon Oct 1 21:00:50 2012 Кодировка:

BLASTX 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= AALF01000001 AALF01000001.1 Yersinia intermedia ATCC 29909 765,
whole genome shotgun sequence.
(4000 letters)

Database: st
4429 sequences; 1,395,779 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

Q8ZPZ0 Q8ZPZ0_SALTY Isocitrate dehydrogenase in e14 prophage (EC... 740 0.0
Q8ZPZ1 RLUE_SALTY Ribosomal large subunit pseudouridine synthase... 306 9e-84
Q8ZPZ3 Q8ZPZ3_SALTY Putative MutT-like protein. 164 3e-41
Q8ZP51 RLUB_SALTY Ribosomal large subunit pseudouridine synthase... 80 1e-15
Q8ZKL1 RLUF_SALTY Ribosomal large subunit pseudouridine synthase... 73 2e-13
P65840 RSUA_SALTY Ribosomal small subunit pseudouridine synthase... 71 6e-13
P37412 LEU3_SALTY 3-isopropylmalate dehydrogenase (EC 1.1.1.85) ... 58 4e-09
Q8ZPV3 Q8ZPV3_SALTY Putative mutator MutT protein. 46 2e-05

>Q8ZPZ0 Q8ZPZ0_SALTY Isocitrate dehydrogenase in e14 prophage (EC
1.1.1.42).
Length = 416

Score = 740 bits (1910), Expect = 0.0
Identities = 367/417 (88%), Positives = 385/417 (92%)
Frame = +1

Query: 1042 MESKVVVPAEGKKITVDAQGKLVVPHNPIIPFIEGDGIGVDVTPAMIHVVDAAVKKAYKG 1221
MESKVVVP EGKKIT+ GKL VP NPIIPFIEGDGIGVDVTPAM+ VVDAAV+KAYKG
Sbjct: 1 MESKVVVPVEGKKITLQ-NGKLNVPENPIIPFIEGDGIGVDVTPAMLKVVDAAVEKAYKG 59

Query: 1222 ERKISWMEIYTGEKSTHVYGKDVWLPEETLDLIREYRVAIKGPLTTPVGGGIRSLNVALR 1401
ERKISWMEIYTGEKST VYG+DVWLP ETLDLIR+YRVAIKGPLTTPVGGGIRSLNVALR
Sbjct: 60 ERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGPLTTPVGGGIRSLNVALR 119

Query: 1402 QQLDLYVCLRPVRYYEGTPSPVKHPELTNMVIFRENAEDIYAGIEWKAGSPEAEKVIKFL 1581
Q+LDLYVCLRPVRYY+GTPSPVKHPELT+MVIFREN+EDIYAGIEWKA S +AEKVIKFL
Sbjct: 120 QELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFL 179

Query: 1582 REEMGVKKIRFPEQCGIGIKPCSEEGTKRLVRAAIEYAITNDRESVTLVHKGNIMKFTEG 1761
REEMGVKKIRFPE CGIGIKPCSEEGTKRLVRAAIEYAITNDR+SVTLVHKGNIMKFTEG
Sbjct: 180 REEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAITNDRDSVTLVHKGNIMKFTEG 239

Query: 1762 AFKDWGYQLAREEFGGELIDGGPWVKIKNPNNGKEIIIKDVIADAFLQQILLRPAEYDVI 1941
AFKDWGYQLAR+EFGGELIDGGPW+KIKNPN GKEI++KDVIADAFLQQILLRPAEYDVI
Sbjct: 240 AFKDWGYQLARDEFGGELIDGGPWLKIKNPNTGKEIVVKDVIADAFLQQILLRPAEYDVI 299

Query: 1942 ACMNLNGDYISDALAAQVXXXXXXXXXXXXDDCALFEATHGTAPKYAGQDKVNPGSIILS 2121
ACMNLNGDYISDALAAQV D+CALFEATHGTAPKYAGQDKVNPGSIILS
Sbjct: 300 ACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILS 359

Query: 2122 AEMMLRHMGWFEAADLIIKGTEGAIQAKTVTYDFERLMDGAKLRKCSEFGQDIIDNM 2292
AEMMLRHM WFEAADLI+KG EGAI AKTVTYDFERLM+GAKL KCSEFG II NM
Sbjct: 360 AEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYDFERLMEGAKLLKCSEFGDAIIANM 416


>Q8ZPZ1 RLUE_SALTY Ribosomal large subunit pseudouridine synthase E
(EC 5.4.99.-) (rRNA- uridine isomerase E) (rRNA
pseudouridylate synthase E).
Length = 221

Score = 306 bits (783), Expect = 9e-84
Identities = 145/205 (70%), Positives = 172/205 (83%)
Frame = -1

Query: 910 MNKFSVKNHKVNRFSTKIQAKQVKPVGPRRVLLFNKPFDVLPQFTDESGRRTLKEFIPFN 731
M K S +NH V RFS++ +K K P+RV+LFNKP+DVLPQFTDE+GRRTLK+FIP
Sbjct: 11 MQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLFNKPYDVLPQFTDEAGRRTLKDFIPVQ 70

Query: 730 DVYAAGRLDRDSEGLLVLTNDGKLQAKLTQPTAKTGKIYFVQVEGVPEDDALDKLRHGVV 551
VYAAGRLDRDSEGLLVLTNDG LQA+LTQP +TGKIY+VQVEG+P++ AL LR GV
Sbjct: 71 GVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNAALQALRTGVT 130

Query: 550 LKDGPTLPAGAELVSEPEWLWPRVPPIRERKNIPTRWLQITLYEGRNRQVRRMTAHIGFP 371
L DGPTLPAG E+V+EP+WLWPR PPIRERKNIPT WL++TLYEGRNRQVRRMTAH+G P
Sbjct: 131 LNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQVRRMTAHVGHP 190

Query: 370 TLRLIRFSVGNLSLADLQPGEWKEI 296
TLRLIR+S+G+ +L L G+W+EI
Sbjct: 191 TLRLIRYSMGDYTLNGLDNGQWREI 215


>Q8ZPZ3 Q8ZPZ3_SALTY Putative MutT-like protein.
Length = 153

Score = 164 bits (416), Expect = 3e-41
Identities = 78/97 (80%), Positives = 82/97 (84%)
Frame = -2

Query: 291 MFKPHVTVACVVHAQGKFLVVEETINGKKLWNQPAGHLEADETLLQAAERELWEETGIRA 112
MFKPHVTVAC+VHA+ KFLVVEETINGK LWNQPAGHLEADETL QAA RELWEETGI A
Sbjct: 1 MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETLAQAAARELWEETGITA 60

Query: 111 TPQSFLRMHQWIAPDKTPFLRFAFVIELLAPLPTHPH 1
PQ F+RMHQWIAPDKTPFLRF F I+L T PH
Sbjct: 61 QPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATDPH 97


>Q8ZP51 RLUB_SALTY Ribosomal large subunit pseudouridine synthase B
(EC 5.4.99.-) (rRNA- uridine isomerase B) (rRNA
pseudouridylate synthase B).
Length = 291

Score = 79.7 bits (195), Expect = 1e-15
Identities = 67/212 (31%), Positives = 98/212 (46%), Gaps = 9/212 (4%)
Frame = -1

Query: 904 KFSVKNHKVNRFSTKIQAKQVKPVGPRRVLLFNKPFDVLPQFTDESGRRTLKEFIPF--- 734
K + H + S K A+Q+ RVL + KP L D GR T+ + +P
Sbjct: 49 KIRIDGHLI---SVKESAEQIC-----RVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG 100

Query: 733 NDVYAAGRLDRDSEGLLVLTNDGKLQAKLTQPTAKTGKIYFVQVEGVPEDDALDKLRHGV 554
A GRLD ++ GLL+ T DG+L +L P+ + + Y V+V G ++ L L GV
Sbjct: 101 ARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKLRDLSRGV 160

Query: 553 VLKDGPTL-----PAGAELVSEPEWLWPRVPPIRERKNIPTRWLQITLYEGRNRQVRRMT 389
L+DGP +G E +++ W +TL EGRNR+VRR+
Sbjct: 161 QLEDGPAAFKTIKFSGGEGINQ--------------------WYNVTLTEGRNREVRRLW 200

Query: 388 AHIGFPTLRLIRFSVGNLSL-ADLQPGEWKEI 296
+G RLIR G++ L L G W E+
Sbjct: 201 EAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232


>Q8ZKL1 RLUF_SALTY Ribosomal large subunit pseudouridine synthase F
(EC 5.4.99.-) (rRNA- uridine isomerase F) (rRNA
pseudouridylate synthase F).
Length = 289

Score = 72.8 bits (177), Expect = 2e-13
Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 1/178 (0%)
Frame = -1

Query: 820 VLLFNKPFDVLPQFTDESGRRTLKEFIPFND-VYAAGRLDRDSEGLLVLTNDGKLQAKLT 644
++ NKP ++ T++ R + +F+ + ++ GRLD+DS+GL+ LTN G L K+
Sbjct: 69 LIALNKPVGIVST-TEDGERDNIVDFVNHSKRIFPIGRLDKDSQGLIFLTNHGDLVNKIL 127

Query: 643 QPTAKTGKIYFVQVEGVPEDDALDKLRHGVVLKDGPTLPAGAELVSEPEWLWPRVPPIRE 464
+ K Y V V+ D+ + + GV + T+ ++ E +++
Sbjct: 128 RAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILG--TVTKKCKVKKEAPFVF-------- 177

Query: 463 RKNIPTRWLQITLYEGRNRQVRRMTAHIGFPTLRLIRFSVGNLSLADLQPGEWKEIRD 290
+ITL +G NRQ+RRM + G+ +L R + N+SL+ + GEW+++ D
Sbjct: 178 ---------RITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPLGEWRDLTD 226


>P65840 RSUA_SALTY Ribosomal small subunit pseudouridine synthase A
(EC 5.4.99.-) (16S pseudouridylate 516 synthase) (16S
pseudouridine 516 synthase) (rRNA- uridine isomerase A)
(rRNA pseudouridylate synthase A).
Length = 231

Score = 70.9 bits (172), Expect = 6e-13
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 6/187 (3%)
Frame = -1

Query: 832 GPRRVLLFNKPFDVLPQFTDESGRRTLKEFIPFNDVY---AAGRLDRDSEGLLVLTNDGK 662
GPR +L NKP + TD+ T+ F+ Y AAGRLD D+ GL+++T+DG+
Sbjct: 59 GPRYFML-NKPQGYVCS-TDDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQ 116

Query: 661 LQAKLTQPTAKTGKIYFVQVEGVPEDDALDKLRHGVVLKDGP--TLPAGAELVSEPEWLW 488
++T P K Y V +E DD + GV L + T PA E+++
Sbjct: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAAQFAKGVQLHNEKDLTKPATLEVIT------ 170

Query: 487 PRVPPIRERKNIPTRWLQITLYEGRNRQVRRMTAHIGFPTLRLIRFSVGNLSL-ADLQPG 311
P++ R +T+ EGR QV+RM A +G + L R +G ++L +L PG
Sbjct: 171 ----PVQVR---------LTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPG 217

Query: 310 EWKEIRD 290
E++ + +
Sbjct: 218 EYRPLTE 224


>P37412 LEU3_SALTY 3-isopropylmalate dehydrogenase (EC 1.1.1.85)
(Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH).
Length = 363

Score = 58.2 bits (139), Expect = 4e-09
Identities = 94/403 (23%), Positives = 161/403 (39%), Gaps = 18/403 (4%)
Frame = +1

Query: 1129 IPFIEGDGIGVDVTPAMIHVVDAAVKKAYKGERKISWMEIYTGEKSTHVYGKDVWLPEET 1308
I + GDGIG +V + V+DA + + +I+ G + +G LP+ T
Sbjct: 7 IAVLPGDGIGPEVMAQALKVMDAVRSRF---DMRITTSHYDVGGIAIDNHGHP--LPKAT 61

Query: 1309 LDLIREYRVAIKGPLTTPVGGGI-------RSLNVALRQQLDLYVCLRPVRYYEGTPS-- 1461
++ + + G + P + R + LR+ L+ LRP + Y+G +
Sbjct: 62 VEGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFC 121

Query: 1462 PVKHPELTN---MVIFRENAEDIYAGI-EWKAGSPEAEKVIK---FLREEMGVKKIRFPE 1620
P++ N ++ RE IY G + + GS + EK + R E+
Sbjct: 122 PLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEI--------- 172

Query: 1621 QCGIGIKPCSEEGTKRLVRAAIEYAITNDRESVTLVHKGNIMKFTEGAFKDWGYQLAREE 1800
+R+ R A E A R VT + K N+++ + + E
Sbjct: 173 --------------ERIARIAFESA-RKRRRKVTSIDKANVLQSS----------ILWRE 207

Query: 1801 FGGELIDGGPWVKIKNPNNGKEIIIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDA 1980
++ P V++ + + D Q++ P+++DV+ C NL GD +SD
Sbjct: 208 IVNDVAKTYPDVELAH-----------MYIDNATMQLIKDPSQFDVLLCSNLFGDILSDE 256

Query: 1981 LAAQVXXXXXXXXXXXXDD-CALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRH-MGWF 2154
A + L+E G+AP AG++ NP + ILS ++LR+ +
Sbjct: 257 CAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDAN 316

Query: 2155 EAADLIIKGTEGAIQAKTVTYDFERLMDGAKLRKCSEFGQDII 2283
+AA I + A++ T D R GA E G DII
Sbjct: 317 DAATAIEQAINRALEEGVRTGDLAR---GAAAVSTDEMG-DII 355


>Q8ZPV3 Q8ZPV3_SALTY Putative mutator MutT protein.
Length = 138

Score = 45.8 bits (107), Expect = 2e-05
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -2

Query: 291 MFKPHVTVACVVHAQGKFLVVEETINGKK--LWNQPAGHLEADETLLQAAERELWEETGI 118
M K VA ++ GK L+ + + + LW G +E ET QA REL EE GI
Sbjct: 1 MIKKLDVVAAIIECDGKILLAQRPAHADQAGLWEFAGGKVEPGETQPQALIRELREELGI 60

Query: 117 RATPQSFLRMHQ 82
ATP ++ HQ
Sbjct: 61 DATPGVYIASHQ 72


Database: st
Posted date: Nov 8, 2007 7:09 PM
Number of letters in database: 1,395,779
Number of sequences in database: 4429

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4429
Number of Hits to DB: 10,006,061
Number of extensions: 220465
Number of successful extensions: 558
Number of sequences better than 1.0e-03: 8
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 8
Length of query: 1333
Length of database: 1,395,779
Length adjustment: 96
Effective length of query: 1237
Effective length of database: 970,595
Effective search space: 1200626015
Effective search space used: 1200626015
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)