Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~element/Term3/pm.txt Дата изменения: Thu Feb 21 16:05:05 2008 Дата индексирования: Mon Oct 1 20:29:54 2012 Кодировка:

TBLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= PYRB_ECOLI P0A786 Aspartate carbamoyltransferase catalytic
chain (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase).
(311 letters)

Database: pm
204 sequences; 2,269,587 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

embl|AE006119|AE006119 Pasteurella multocida subsp. multocida st... 77 9e-16
embl|AE006208|AE006208 Pasteurella multocida subsp. multocida st... 26 3.2
embl|AE006054|AE006054 Pasteurella multocida subsp. multocida st... 25 4.2
embl|AE006168|AE006168 Pasteurella multocida subsp. multocida st... 25 5.5
embl|AE006166|AE006166 Pasteurella multocida subsp. multocida st... 25 5.5
embl|AE006038|AE006038 Pasteurella multocida subsp. multocida st... 25 7.2

>embl|AE006119|AE006119 Pasteurella multocida subsp. multocida str.
Pm70 section 86 of 204 of the complete genome.
Length = 10661

Score = 77.4 bits (189), Expect = 9e-16
Identities = 85/292 (29%), Positives = 131/292 (44%), Gaps = 16/292 (5%)
Frame = +1

Query: 5 LYQKHIISINDLSRDDLNLVLATAAKLK-----ANPQPELLKHKVIASCFFEASTRTRLS 59
L +H + + D + ++ +L +A LK QP L K K IA F + STRTR S
Sbjct: 7294 LRHRHFLRLMDFTPTEIQFLLDLSANLKKAKYTGTEQPRL-KGKNIALIFEKTSTRTRCS 7470

Query: 60 FETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDAIVMRHPQEGAARLATEF 119
FE + + GA+V + + + +G K E++ DT V+ D I R + + ++
Sbjct: 7471 FEVAAYDQGANVT-YIGPSGSQIGHK-ESMKDTARVLGRMYDGIQYRGYGQELVEILAQY 7644

Query: 120 SGNVPVLNAGDGSNQHPTQTLLDLFTIQE--TQGRLDNLHVAMVGDLKYGRTVHSLTQAL 177
SG VPV N G + HPTQ L D T+ E RL+ + +A +GD + +S +
Sbjct: 7645 SG-VPVWN-GLTDDFHPTQILADFLTMLEHGEGKRLNQMKMAYLGDAR-NNMGNSFVEGA 7815

Query: 178 AKFDGNRFYFIAPDALAMPQYILD----MLDEKGIAWSLHSSIEEVMAEVDILYMTRVQK 233
A G +AP A Q +LD M + G + ++EE + VD LY T +
Sbjct: 7816 ALM-GMDLRLVAPKAYWPEQKLLDEVAEMAKKTGAKITCTENVEEGVKGVDFLY-TDIWV 7989

Query: 234 ERLDPSEYAN-----VKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDK 280
+P E +K V +A +K +H LP + T V K
Sbjct: 7990 SMGEPEEAWEQRINLMKPYQVNKALLEKTGNPKVKFMHCLPAFHDENTTVGK 8145


>embl|AE006208|AE006208 Pasteurella multocida subsp. multocida str.
Pm70 section 175 of 204 of the complete genome.
Length = 8850

Score = 25.8 bits (55), Expect = 3.2
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Frame = +3

Query: 92 TISVISTYVDAIVMRHPQE------------GAARLATEFSGNVPVLNAGDGSNQHPTQT 139
TI ST + AI++RH + G + + + + + +N+G+ N PT+T
Sbjct: 2910 TILSKSTRIPAILIRHSAQVELQNRGNIKSLGHSAVFIQNANKIDFMNSGNLENSDPTKT 3089

Query: 140 LLDL 143
++ L
Sbjct: 3090 VVSL 3101


>embl|AE006054|AE006054 Pasteurella multocida subsp. multocida str.
Pm70 section 21 of 204 of the complete genome.
Length = 11152

Score = 25.4 bits (54), Expect = 4.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2

Query: 3 NPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKVI 45
N + + I+ NDL L L+ +A LKA P+ +L + ++
Sbjct: 1008 NTVTTRVILLRNDLGEGSLGLMAPLSAPLKAPPRSDLNANSIL 880


>embl|AE006168|AE006168 Pasteurella multocida subsp. multocida str. Pm70
section 135 of 204 of the complete genome.
Length = 11367

Score = 25.0 bits (53), Expect = 5.5
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3

Query: 104 VMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDL 143
+ RH EG R+ NV VLNAG+G N P L L
Sbjct: 10797 IARHG-EGMTRI------NVGVLNAGEGRNVIPATAQLQL 10895


>embl|AE006166|AE006166 Pasteurella multocida subsp. multocida str.
Pm70 section 133 of 204 of the complete genome.
Length = 11061

Score = 25.0 bits (53), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1

Query: 108 PQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQ 147
P A + T+F + PVL+ G +P++ + DLFT Q
Sbjct: 1672 PCRTAEEVKTQFGADFPVLDLPVGEATNPSE-IRDLFTHQ 1788


>embl|AE006038|AE006038 Pasteurella multocida subsp. multocida str.
Pm70 section 5 of 204 of the complete genome.
Length = 12631

Score = 24.6 bits (52), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1

Query: 47 SCFFEASTRTRLSFETSMHRLGASVV 72
+CF +STR R SF S++ SVV
Sbjct: 3052 NCFAYSSTRPRFSFFNSINAANFSVV 3129


Database: pm
Posted date: Dec 18, 2007 5:10 PM
Number of letters in database: 2,269,587
Number of sequences in database: 204

Lambda K H
0.319 0.132 0.378

Gapped
Lambda K H
0.267 0.0410 0.140


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 204
Number of Hits to DB: 625,599
Number of extensions: 7446
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 311
Length of database: 756,529
Length adjustment: 82
Effective length of query: 229
Effective length of database: 739,801
Effective search space: 169414429
Effective search space used: 169414429
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)