Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~element/Term3/blast_3.txt Дата изменения: Wed Feb 20 20:07:47 2008 Дата индексирования: Mon Oct 1 21:01:20 2012 Кодировка:

BLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= J01670 J01670.1 E.coli pyrBI operon coding for aspartate
transcarbamoylase catalytic and regulatory chains.
(936 letters)

Database: thr
884 sequences; 12,243,887 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section... 511 e-145

>AE008909 AE006468 |AE008909| Salmonella typhimurium LT2, section 213 of
220 of the complete genome.
Length = 20095

Score = 511 bits (258), Expect = e-145
Identities = 633/758 (83%)
Strand = Plus / Minus


Query: 1 atggctaatccgctatatcagaaacatatcatttccataaacgaccttagtcgcgatgac 60
|||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct: 10035 atggctaacccgctatatcaaaaacatatcatttccataaacgacctcagccgcgacgat 9976


Query: 61 cttaatctggtgctggcgacagcggcgaaactgaaagcaaacccgcaaccagagctgttg 120
||||||||||| |||||||| ||||||||| | ||||| |||||||| || ||||| |||
Sbjct: 9975 cttaatctggtactggcgacggcggcgaaattaaaagccaacccgcagccggagcttttg 9916


Query: 121 aagcacaaagtcattgccagctgtttcttcgaagcctctacccgtacccgcctctctttt 180
|| || ||||| || |||||||| || ||||||||||| || ||||||||||| || |||
Sbjct: 9915 aaacataaagtgatcgccagctgctttttcgaagcctccacgcgtacccgcctgtcgttt 9856


Query: 181 caaacatctatgcaccgcctgggggccagcgtggtgggcttctccgacagcgccaataca 240
|||| || ||||| |||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct: 9855 gaaacttcaatgcatcgcctgggcgccagcgtagtgggcttctccgacagcgccaacacg 9796


Query: 241 tcactgggtaaaaaaggcgaaacgcttgccgataccatttcagttatcagcacttacgtc 300
|| ||||| |||||||| |||||| | ||||| || || ||||| || |||||||||||
Sbjct: 9795 tcgctggggaaaaaaggagaaacgttagccgacacgatctcagtgattagcacttacgtg 9736


Query: 301 gatgcgatagtgatgcgtcatccgcaggaaggtgcggcgcgcctggccaccgagttttcc 360
|| ||||| |||||||| |||||||| ||||| ||||| || ||||| || |||||||||
Sbjct: 9735 gacgcgattgtgatgcgccatccgcaagaaggcgcggcacgtctggcgacggagttttcc 9676


Query: 361 ggcaatgtaccggtactgaatgccggtgatggctccaaccaacatccgacgcaaaccttg 420
|| | || ||||| || ||||| || || || || ||||| |||||||| || ||| ||
Sbjct: 9675 ggtcaggtgccggtgctcaatgcgggcgacggttcgaaccagcatccgacacagaccctg 9616


Query: 421 ctggacttattcactattcaggaaacccaggggcgtctggacaatctccacgtcgcaatg 480
|||| | ||||| || |||||||| ||||| |||||||| || | || |||| |||
Sbjct: 9615 ttggatctgttcaccatccaggaaacgcagggccgtctggataacttgcatatcgcgatg 9556


Query: 481 gttggtgacctgaaatatggtcgcaccgttcactccctgactcaggcgttagctaagttc 540
|| || || ||||||||||| |||||||| || || || || |||||| | || || ||
Sbjct: 9555 gtcggcgatctgaaatatggccgcaccgtgcattcgctaacccaggcgctggcgaaattt 9496


Query: 541 gacggcaaccgtttttacttcatcgcgccggacgcgctggcaatgccgcaatacattctg 600
||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct: 9495 agcggcaaccgtttttattttatcgcgccggacgcgctggcgatgccgcagtacattctg 9436


Query: 601 gatatgctcgatgaaaaagggatcgcatggagtctgcacagctctattgaagaagtgatg 660
|||||||| |||||||||||||| || ||||| ||||| | ||||||||||| || |||
Sbjct: 9435 gatatgctggatgaaaaagggatggcctggagcctgcatggttctattgaagaggtcatg 9376


Query: 661 gtggaagtagacatcctgtacatgacccgcgtgcaaaaagagcgtctggacccgtccgag 720
| || || |||||||| || ||||| ||||| || ||||||||||| |||||||| |||
Sbjct: 9375 gccgacgtcgacatcctctatatgactcgcgtacagaaagagcgtctcgacccgtcggag 9316


Query: 721 tacgccaacgtgaaagcgcagtttgttcttcgcgccag 758
|||||||| ||||| |||||||||||||| ||||||||
Sbjct: 9315 tacgccaatgtgaaggcgcagtttgttctgcgcgccag 9278



Score = 129 bits (65), Expect = 1e-29
Identities = 110/125 (88%)
Strand = Plus / Minus


Query: 781 aatatgaaagtgctgcatccgttgccgcgtgttgatgagattgcgacggatgttgataaa 840
||||||||||||||||| ||| ||||||| ||||||| || | |||||||| ||||||
Sbjct: 9255 aatatgaaagtgctgcacccgctgccgcggattgatgaaatcaccacggatgtggataaa 9196


Query: 841 acgccacacgcctggtacttccagcaggcaggcaacgggattttcgctctgcaagcgtta 900
||||||||||||||||||||||| ||||| |||||||| |||||||||| || ||||||
Sbjct: 9195 acgccacacgcctggtacttccaacaggcgggcaacggtattttcgctcgccaggcgtta 9136


Query: 901 ctggc 905
|||||
Sbjct: 9135 ctggc 9131


Database: thr
Posted date: Feb 20, 2008 8:14 PM
Number of letters in database: 12,243,887
Number of sequences in database: 884

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 884
Number of Hits to DB: 142,083
Number of extensions: 8872
Number of successful extensions: 67
Number of sequences better than 1.0e-03: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 936
Length of database: 12,243,887
Length adjustment: 17
Effective length of query: 919
Effective length of database: 12,228,859
Effective search space: 11238321421
Effective search space used: 11238321421
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
S2: 22 (44.1 bits)