PAL2NAL output

#------------------------------------------------------------------------#
#  WARNING: PYRB_ECOLI pepAlnPos 1: M does not correspond to atg
#  WARNING: PYRB_ECOLI pepAlnPos 61: E does not correspond to caa
#  WARNING: PYRB_ECOLI pepAlnPos 221: A does not correspond to gtg
#  WARNING: PYRB_ECOLI pepAlnPos 297: R does not correspond to ctg
#------------------------------------------------------------------------#

              M   A   N   S   L   Y   Q   K   H   I   I   S   I   A   E   L   S   R   A   E
PYRB_VIBCH    atg gcg aat tcg ctt tac caa aag cac atc atc tcc att gct gaa ctc tca cgc gcg gag
              M   A   N   P   L   Y   Q   K   H   I   I   S   I   N   D   L   S   R   D   D
PYRB_ECOLI    atg gct aat ccg cta tat cag aaa cat atc att tcc ata aac gac ctt agt cgc gat gac

              L   E   L   I   V   K   T   A   G   Q   L   K   A   Q   P   N   P   E   L   I
PYRB_VIBCH    ttg gag ttg att gtg aaa acc gca ggc caa ctg aag gca caa ccg aat cca gag ctg atc
              L   N   L   V   L   A   T   A   A   K   L   K   A   N   P   Q   P   E   L   L
PYRB_ECOLI    ctt aat ctg gtg ctg gcg aca gcg gcg aaa ctg aaa gca aac ccg caa cca gag ctg ttg

              K   H   K   V   V   A   S   C   F   F   E   P   S   T   R   T   R   L   S   F
PYRB_VIBCH    aag cac aag gtc gtg gcc agc tgt ttc ttt gaa cct tcc acc cgt act cgc ctc tca ttc
              K   H   K   V   I   A   S   C   F   F   E   A   S   T   R   T   R   L   S   F
PYRB_ECOLI    aag cac aaa gtc att gcc agc tgt ttc ttc gaa gcc tct acc cgt acc cgc ctc tct ttt

              E   T   A   I   Q   R   I   G   G   S   V   I   G   F   D   N   G   G   N   T
PYRB_VIBCH    gag aca gca atc caa cgt atc ggt ggc agc gtg att ggc ttt gat aac ggc ggc aac acg
              E   T   S   M   H   R   L   G   A   S   V   V   G   F   S   D   S   A   N   T
PYRB_ECOLI    caa aca tct atg cac cgc ctg ggg gcc agc gtg gtg ggc ttc tcc gac agc gcc aat aca

              S   L   A   K   K   G   E   T   L   A   D   S   V   R   V   I   S   S   Y   V
PYRB_VIBCH    tca cta gcg aag aaa ggc gaa acc cta gcc gat tca gta cgc gtc atc tcc tct tat gtt
              S   L   G   K   K   G   E   T   L   A   D   T   I   S   V   I   S   T   Y   V
PYRB_ECOLI    tca ctg ggt aaa aaa ggc gaa acg ctt gcc gat acc att tca gtt atc agc act tac gtc

              D   A   F   V   M   R   H   P   Q   E   G   A   A   R   L   A   S   E   F   S
PYRB_VIBCH    gat gct ttt gtg atg cgt cat ccg caa gaa ggt gcc gcg cgt tta gcg tct gaa ttt tct
              D   A   I   V   M   R   H   P   Q   E   G   A   A   R   L   A   T   E   F   S
PYRB_ECOLI    gat gcg ata gtg atg cgt cat ccg cag gaa ggt gcg gcg cgc ctg gcc acc gag ttt tcc

              N   G   V   P   V   I   N   A   G   D   G   S   N   Q   H   P   S   Q   T   L
PYRB_VIBCH    aac ggc gtc cca gtg att aac gcc ggt gat ggt tca aac caa cac cca tcg caa acc ctg
              G   N   V   P   V   L   N   A   G   D   G   S   N   Q   H   P   T   Q   T   L
PYRB_ECOLI    ggc aat gta ccg gta ctg aat gcc ggt gat ggc tcc aac caa cat ccg acg caa acc ttg

              L   D   L   Y   S   I   F   E   T   Q   G   R   L   D   N   L   D   V   A   F
PYRB_VIBCH    ctc gat ctc tac tcc att ttc gaa acc caa ggc cgt ctc gat aac ctc gat gtc gcg ttc
              L   D   L   F   T   I   Q   E   T   Q   G   R   L   D   N   L   H   V   A   M
PYRB_ECOLI    ctg gac tta ttc act att cag gaa acc cag ggg cgt ctg gac aat ctc cac gtc gca atg

              V   G   D   L   K   Y   G   R   T   V   H   S   L   A   Q   A   L   A   K   F
PYRB_VIBCH    gtc ggt gat tta aaa tat ggt cgc acc gtg cat tcg ctg gca caa gct ctg gct aaa ttt
              V   G   D   L   K   Y   G   R   T   V   H   S   L   T   Q   A   L   A   K   F
PYRB_ECOLI    gtt ggt gac ctg aaa tat ggt cgc acc gtt cac tcc ctg act cag gcg tta gct aag ttc

              D   N   N   R   F   Y   F   V   A   P   E   A   L   A   M   P   D   Y   I   C
PYRB_VIBCH    gat aac aac cgc ttc tac ttt gtg gca ccg gaa gcc cta gcg atg cca gac tac atc tgt
              D   G   N   R   F   Y   F   I   A   P   D   A   L   A   M   P   Q   Y   I   L
PYRB_ECOLI    gac ggc aac cgt ttt tac ttc atc gcg ccg gac gcg ctg gca atg ccg caa tac att ctg

              E   E   L   D   E   A   G   V   K   Y   Q   V   F   S   D   M   E   S   V   I
PYRB_VIBCH    gaa gag ctg gat gaa gca ggt gtg aaa tac caa gtg ttc agc gat atg gaa agc gtg atc
              D   M   L   D   E   K   G   I   A   W   S   L   H   S   S   I   E   E   V   M
PYRB_ECOLI    gat atg ctc gat gaa aaa ggg atc gca tgg agt ctg cac agc tct att gaa gaa gtg atg

              P   E   L   D   I   L   Y   M   T   R   V   Q   K   E   R   F   D   E   S   E
PYRB_VIBCH    cca gag ctg gat att ctg tac atg acg cgt gta cag aaa gaa cgt ttt gat gag tcg gaa
              A   E   V   D   I   L   Y   M   T   R   V   Q   K   E   R   L   D   P   S   E
PYRB_ECOLI    gtg gaa gta gac atc ctg tac atg acc cgc gtg caa aaa gag cgt ctg gac ccg tcc gag

              Y   A   H   I   K   S   A   Y   I   L   T   A   A   H   L   S   D   A   R   S
PYRB_VIBCH    tac gca cat atc aaa tcg gcc tat atc ttg acg gcc gct cac ctg agc gat gcg cgc agc
              Y   A   N   V   K   A   Q   F   V   L   R   A   S   D   L   H   N   A   K   A
PYRB_ECOLI    tac gcc aac gtg aaa gcg cag ttt gtt ctt cgc gcc agt gat ctc cac aac gcc aaa gcc

              N   L   K   V   L   H   P   L   P   R   V   D   E   I   T   T   D   V   D   K
PYRB_VIBCH    aat ctg aaa gtg ctg cac cca ctg cca cgg gtg gat gag atc acc act gat gtc gat aaa
              N   M   K   V   L   H   P   L   P   R   V   D   E   I   A   T   D   V   D   K
PYRB_ECOLI    aat atg aaa gtg ctg cat ccg ttg ccg cgt gtt gat gag att gcg acg gat gtt gat aaa

              T   P   H   A   Y   Y   F   E   Q   V   E   N   G   V   Y   A   R   E   A   L
PYRB_VIBCH    acc cca cac gct tac tat ttc gag caa gtt gaa aac gga gtt tat gcc cgt gaa gcc ttg
              T   P   H   A   W   Y   F   Q   Q   A   G   N   G   I   F   A   R   Q   A   L
PYRB_ECOLI    acg cca cac gcc tgg tac ttc cag cag gca ggc aac ggg att ttc gct ctg caa gcg tta

              L   A   L   V   L   N   E   S   L
PYRB_VIBCH    ctg gct cta gtt ttg aac gaa tcg ctg
              L   A   L   V   L   N   R   D   L   V   L
PYRB_ECOLI    ctg gca ctg gtt ctg aat cgc gat ctg

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