Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/~element/Term4/Block1/nucleot.txt Дата изменения: Wed Mar 12 15:42:44 2008 Дата индексирования: Tue Oct 2 10:46:49 2012 Кодировка:

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# Program: needle
# Rundate: Wed 12 Mar 2008 16:47:15
# Commandline: needle
# -asequence choler_gen.fasta
# -bsequence pyrb_gen.fasta
# -outfile nucleot.txt
# Align_format: srspair
# Report_file: nucleot.txt
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: cholera
# 2: PyrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity: 656/988 (66.4%)
# Similarity: 656/988 (66.4%)
# Gaps: 110/988 (11.1%)
# Score: 2061.5
#
#
#=======================================

cholera 1 atggcgaattcgctttaccaaaagcacatcatctccat------------ 38
|||||.|||.||||.||.||.||.||.|||||.|||||
PyrB 1 atggctaatccgctatatcagaaacatatcatttccataaacgaccttag 50

cholera 39 ------tg--ctgaactctcacgcgcggagttggagttgattgtgaaaac 80
|| ||.|| ||| ||.|.|||.| ||
PyrB 51 tcgcgatgaccttaa-tct-------ggtgctggcg------------ac 80

cholera 81 cgcaggc-caactgaaggcacaaccgaatccagagctgatcaagcacaag 129
.|| ||| .|||||||.|||.|.|||.|.|||||||||.|.||||||||.
PyrB 81 agc-ggcgaaactgaaagcaaacccgcaaccagagctgttgaagcacaaa 129

cholera 130 gtcgtggccagctgtttctttgaaccttccacccgtactcgcctctcatt 179
|||.|.||||||||||||||.|||.|.||.||||||||.||||||||.||
PyrB 130 gtcattgccagctgtttcttcgaagcctctacccgtacccgcctctcttt 179

cholera 180 cgagacagcaatccaacgtatcggtggcagcgtgattggctttgataacg 229
..|.|||.|.||.||.||..|.||.|.|||||||.|.|||||.....||.
PyrB 180 tcaaacatctatgcaccgcctgggggccagcgtggtgggcttctccgaca 229

cholera 230 gcggcaacacgtcactagcgaagaaaggcgaaaccctagccga------t 273
|||.|||.||.|||||.|..||.|||||||||||.||.||||| |
PyrB 230 gcgccaatacatcactgggtaaaaaaggcgaaacgcttgccgataccatt 279

cholera 274 tcagtacgcgtcatctcctcttatgttgatgcttttgtgatgcgtcatcc 323
||| ||.|||..|.||||.||.|||||..|.||||||||||||||
PyrB 280 tca------gttatcagcacttacgtcgatgcgatagtgatgcgtcatcc 323

cholera 324 gcaagaaggtgccgcgcgtttagcgtctgaattttctaacggc---gtcc 370
|||.||||||||.|||||..|.||..|.||.||||| |||| ||.|
PyrB 324 gcaggaaggtgcggcgcgcctggccaccgagttttc---cggcaatgtac 370

cholera 371 cagtgattaacgccggtgatggttcaaaccaacacccatcgcaaaccctg 420
|.||..|.||.|||||||||||.||.||||||||.||..||||||||.||
PyrB 371 cggtactgaatgccggtgatggctccaaccaacatccgacgcaaaccttg 420

cholera 421 ctcgatctctactccattttc--gaaacccaaggccgtctcgataacctc 468
||.|| || ||.||..|.||| ||||||||.||.|||||.||.||.|||
PyrB 421 ctgga-ct-tattcactattcaggaaacccaggggcgtctggacaatctc 468

cholera 469 gatgtcgcgttcgtcggtgatttaaaatatggtcgcaccgtgcattcgct 518
.|.|||||..|.||.|||||..|.|||||||||||||||||.||.||.||
PyrB 469 cacgtcgcaatggttggtgacctgaaatatggtcgcaccgttcactccct 518

cholera 519 ggcacaagctctggctaaatttgataacaaccgcttctactttgtggcac 568
|.|.||.||..|.|||||.||.||...||||||.||.|||||..|.||.|
PyrB 519 gactcaggcgttagctaagttcgacggcaaccgtttttacttcatcgcgc 568

cholera 569 cggaagccctagcgatgccagactaca-tctgtgaagagctggatgaagc 617
||||.||.||.||.|||||..|.|||| |||| ||...|||.||||||..
PyrB 569 cggacgcgctggcaatgccgcaatacattctg-gatatgctcgatgaaaa 617

cholera 618 aggtgtgaaataccaag-----tgttcagcgatatggaaagcgtgatccc 662
||| .||..||.| ||..||||..|||.|||...|||||...
PyrB 618 agg-----gatcgcatggagtctgcacagctctattgaagaagtgatggt 662

cholera 663 agagctggatattctgtacatgacgcgtgtacagaaagaacgttttgatg 712
.||..|.||.||.|||||||||||.||.||.||.|||||.|||.|.||..
PyrB 663 ggaagtagacatcctgtacatgacccgcgtgcaaaaagagcgtctggacc 712

cholera 713 agtcggaatacgcacatatcaaatcg--gcctatatcttgacg-gcc--- 756
.|||.||.|||||..|..|.|||.|| |..|.| |||| || |||
PyrB 713 cgtccgagtacgccaacgtgaaagcgcagtttgt-tctt--cgcgccagt 759

cholera 757 gctcacctgagcg---atgcgcgcagcaatctgaaagtgctgcacccact 803
|.||.||..|.|| |.|| ||||.|||||||||||||.||..|
PyrB 760 gatctccacaacgccaaagc------caatatgaaagtgctgcatccgtt 803

cholera 804 gccacgggtggatgagatcaccactgatgtcgataaaaccccacacgctt 853
|||.||.||.||||||||..|.||.|||||.||||||||.||||||||.|
PyrB 804 gccgcgtgttgatgagattgcgacggatgttgataaaacgccacacgcct 853

cholera 854 actatttcgagcaagttgaaaacggagtttatgcccgtg-aagccttgct 902
..||.|||.||||.|..|..|||||..|||..||.| || ||||.||.||
PyrB 854 ggtacttccagcaggcaggcaacgggattttcgctc-tgcaagcgttact 902

cholera 903 ggctctagttttgaacgaatcg----------ctgtaa 930
|||.||.|||.| |||||| ||||||
PyrB 903 ggcactggttct----gaatcgcgatctggtactgtaa 936


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