| age |
author |
description |
| Sat, 26 Mar 2011 02:16:01 +0300 |
boris (kodomo) |
fix default values of set_pdb_chain() parameters |
| Sat, 26 Mar 2011 01:24:21 +0300 |
boris (kodomo) |
structure.py: add join parameter to pair_cores_parts() |
| Sat, 26 Mar 2011 01:15:35 +0300 |
boris (kodomo) |
fix syntax error |
| Sat, 26 Mar 2011 01:13:56 +0300 |
boris (kodomo) |
structure.py: add min_core_size parameter to pair_core_parts() |
| Sat, 26 Mar 2011 01:09:05 +0300 |
boris (kodomo) |
structure.py: fix add_surrounded_columns() |
| Sat, 26 Mar 2011 00:42:07 +0300 |
Daniil Alexeyevsky |
Probably fixed fileio.EmbossFile.write_strings error in unlink |
| Sat, 26 Mar 2011 00:34:30 +0300 |
boris (kodomo) |
structure.py: improve set_pdb_chain() |
| Sat, 26 Mar 2011 00:18:15 +0300 |
Daniil Alexeyevsky |
Typo in allpy.fileio.write_strings |
| Sat, 26 Mar 2011 00:15:56 +0300 |
Daniil Alexeyevsky |
Fixed alignment output: don't use 'write_string', since in only works for fasta |
| Fri, 25 Mar 2011 23:12:21 +0300 |
boris (kodomo) |
structure.py: opportunity not to store entire pdb info, xyz only |
| Fri, 25 Mar 2011 23:09:58 +0300 |
boris (kodomo) |
Automated merge with ssh://kodomo/allpy |
| Thu, 17 Mar 2011 17:48:37 +0300 |
boris (kodomo) |
fix previous commit |
| Thu, 17 Mar 2011 17:03:27 +0300 |
boris (kodomo) |
structure: set_pdb_chain() allows 2 mutations in pdb sequence |
| Thu, 24 Mar 2011 21:21:11 +0300 |
Daniil Alexeyevsky |
Merge in favour of rewritten fileio |
| Thu, 24 Mar 2011 21:15:48 +0300 |
Daniil Alexeyevsky |
Added test/test_usecases to use usecase examples as unit tests |
| Thu, 24 Mar 2011 21:13:54 +0300 |
Daniil Alexeyevsky |
Clean and simple rewrite of usecase3 |
| Thu, 24 Mar 2011 21:10:12 +0300 |
Daniil Alexeyevsky |
Bug in base.Alignment.remove_gap_columns (reversed(enumerate(...)) is surprisingly illegal python construct) |
| Thu, 24 Mar 2011 20:46:06 +0300 |
Daniil Alexeyevsky |
Clean rewrite of fileio |
| Thu, 24 Mar 2011 20:45:32 +0300 |
Daniil Alexeyevsky |
Don't import fileio in blocks3d, since it's not used there |
| Thu, 24 Mar 2011 20:43:23 +0300 |
Daniil Alexeyevsky |
usecase1: write test file to stdout to ease testing and litter less |
| Thu, 24 Mar 2011 20:36:19 +0300 |
Daniil Alexeyevsky |
Fixed usecase1 to use realign instead of process |
| Thu, 24 Mar 2011 20:22:46 +0300 |
boris (kodomo) |
fix bug in continuous_blocks() |
| Thu, 17 Mar 2011 16:56:48 +0300 |
boris (kodomo) |
processors: add no_gaps parameter to Muscle processor |
| Thu, 17 Mar 2011 11:41:15 +0300 |
boris (kodomo) |
backout (incorrect commit) |
| Thu, 17 Mar 2011 11:39:58 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Thu, 17 Mar 2011 11:26:53 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Wed, 16 Mar 2011 22:50:50 +0300 |
boris (kodomo) |
structure: fix bug in set_pdb_chain() |
| Wed, 16 Mar 2011 22:36:48 +0300 |
boris (kodomo) |
fix a bug |
| Wed, 16 Mar 2011 22:31:24 +0300 |
boris (kodomo) |
minor fix: use column2pos method |
| Wed, 16 Mar 2011 22:26:42 +0300 |
boris (kodomo) |
move generation of html to method of structure.BlockMixin |
| Wed, 16 Mar 2011 22:15:19 +0300 |
boris (kodomo) |
fix blocks_to_file() |
| Wed, 16 Mar 2011 22:04:58 +0300 |
boris (kodomo) |
add methods to save and load list of blocks from file |
| Wed, 16 Mar 2011 21:34:06 +0300 |
boris (kodomo) |
structure: move column2pos to separate function |
| Wed, 16 Mar 2011 20:09:19 +0300 |
boris (kodomo) |
structure: pick out pair_core_parts() |
| Wed, 16 Mar 2011 19:59:52 +0300 |
boris (kodomo) |
structure.py: fixes |
| Wed, 16 Mar 2011 19:50:06 +0300 |
boris (kodomo) |
documentation cleanup |
| Wed, 16 Mar 2011 19:45:56 +0300 |
boris (kodomo) |
gpaph: fix connected_components() |
| Wed, 16 Mar 2011 19:42:58 +0300 |
boris (kodomo) |
graph: improve expand_to_max_clique() |
| Wed, 09 Mar 2011 17:10:44 +0300 |
boris (kodomo) |
merge |
| Fri, 04 Mar 2011 15:16:28 +0300 |
boris (kodomo) |
structure.py: separate pdb-loading from auto_pdb |
| Fri, 04 Mar 2011 21:20:44 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Mon, 28 Feb 2011 22:40:16 +0300 |
Daniil Alexeyevsky |
allpy.processors: make temporary files named |
| Tue, 01 Mar 2011 00:17:13 +0300 |
boris |
Automated merge with ssh://kodomo/allpy |
| Mon, 28 Feb 2011 16:19:06 +0300 |
boris |
blocks3s/wt: improve explanations (translations) |
| Mon, 28 Feb 2011 16:14:27 +0300 |
boris |
code cleanup |
| Mon, 28 Feb 2011 16:11:20 +0300 |
boris |
kill blocks3d process in widget destructor |
| Mon, 28 Feb 2011 13:27:31 +0300 |
boris |
blocks3d/wt: remove useless includes from header file |
| Mon, 28 Feb 2011 22:20:59 +0300 |
Daniil Alexeyevsky |
Moved freqs.py to utils, since it is not a test |
| Mon, 28 Feb 2011 22:18:49 +0300 |
Daniil Alexeyevsky |
Removed some obsolete broken tests |
| Mon, 28 Feb 2011 22:12:56 +0300 |
Daniil Alexeyevsky |
Makefile: renamed target test to tests to implicitly make it PHONY |
| Mon, 28 Feb 2011 22:06:34 +0300 |
Daniil Alexeyevsky |
Run of make force-doc: updated autogenerated sphinx docs |
| Mon, 28 Feb 2011 22:06:03 +0300 |
Daniil Alexeyevsky |
Makefile: added rules "tests" and "doc" for running tests and rebuilding documentation |
| Mon, 28 Feb 2011 21:36:15 +0300 |
Daniil Alexeyevsky |
codes.py, mkcodes: Added codes B, Z. Uniformly uppercased all entries. (Fixes #34) |
| Mon, 28 Feb 2011 21:34:38 +0300 |
Daniil Alexeyevsky |
test_base: Removed tests for private interfaces (which changed) |
| Mon, 28 Feb 2011 21:17:41 +0300 |
Daniil Alexeyevsky |
Reimplemented flush(direction) as processor1.2.0 |
| Mon, 28 Feb 2011 19:24:28 +0300 |
Daniil Alexeyevsky |
mkcodes.py, codes.py: remove entries with 1-letter code longer than 1 letter |
| Mon, 28 Feb 2011 19:19:34 +0300 |
Daniil Alexeyevsky |
Added .hgignore rules to ignore files and directories named temp and temp.* anywhere |
| Mon, 28 Feb 2011 19:17:07 +0300 |
Daniil Alexeyevsky |
Added Makefile to automate building of codes.py |
| Mon, 28 Feb 2011 19:15:31 +0300 |
Daniil Alexeyevsky |
Updated allpy/data/codes.py from fresh components.cif |
| Mon, 28 Feb 2011 19:14:48 +0300 |
Daniil Alexeyevsky |
mkcodes.py: add vim modeline to the output |
