| age |
author |
description |
| Tue, 23 Nov 2010 17:10:23 +0300 |
boris (netbook) |
repeats: improve repeat.__repr__; find doctest mismatch |
| Tue, 23 Nov 2010 16:55:03 +0300 |
boris (netbook) |
repeats: doctest completed |
| Tue, 23 Nov 2010 16:34:19 +0300 |
boris (netbook) |
repeats: fix the mistake |
| Tue, 23 Nov 2010 16:33:38 +0300 |
boris (netbook) |
repeats: test improvements |
| Tue, 23 Nov 2010 16:28:20 +0300 |
boris (netbook) |
repeats: clear code |
| Tue, 23 Nov 2010 16:26:14 +0300 |
boris (netbook) |
repeats: ugly draft completed |
| Tue, 23 Nov 2010 15:28:24 +0300 |
boris (netbook) |
repeats: fixes |
| Tue, 23 Nov 2010 15:22:36 +0300 |
boris (netbook) |
merge |
| Tue, 23 Nov 2010 15:21:24 +0300 |
boris (netbook) |
repeat: fixes, doctest, config |
| Fri, 19 Nov 2010 11:44:04 +0300 |
boris (netbook) |
repeats: fix in formula for ori |
| Mon, 22 Nov 2010 14:05:30 +0300 |
Daniil Alexeyevsky |
Updated debian package revision number to force installation of updated python-allpy |
| Mon, 22 Nov 2010 14:01:31 +0300 |
Daniil Alexeyevsky |
(DO NOT PUSH THE NON-WORKING CODE!) Fixed stubs in allpy/markup.py |
| Mon, 22 Nov 2010 13:43:23 +0300 |
Daniil Alexeyevsky |
Added rules for building Debian packages. |
| Mon, 22 Nov 2010 13:40:51 +0300 |
Daniil Alexeyevsky |
Added distutuils setup.py which seems to work fine |
| Mon, 22 Nov 2010 13:36:48 +0300 |
Daniil Alexeyevsky |
Converted geometrical_core.py to a proper UNIX script. |
| Fri, 19 Nov 2010 00:17:11 +0300 |
boris |
repeats: function repeat_joiner.full_repeats() seems completed |
| Thu, 18 Nov 2010 23:51:20 +0300 |
boris |
repeats: preorder traversal for repeat_group. |
| Thu, 18 Nov 2010 22:07:49 +0300 |
boris |
create branch for old implementation of geometrical-coregeometrical-core-old |
| Thu, 18 Nov 2010 21:42:16 +0300 |
Daniil Alexeyevsky |
Removed old implementation of geometrical_core. |
| Thu, 18 Nov 2010 19:38:05 +0300 |
Daniil Alexeyevsky |
Renamed lib to allpy |
| Thu, 18 Nov 2010 00:01:07 +0300 |
boris (netbook) |
repeats: visitors for visiting tree items (almost) completed |
| Wed, 17 Nov 2010 21:06:18 +0300 |
boris (netbook) |
merge |
| Wed, 17 Nov 2010 21:04:19 +0300 |
boris (netbook) |
repeat joining program -- some drafts |
| Wed, 17 Nov 2010 21:02:10 +0300 |
boris (netbook) |
rename some Alignment member function and attributes |
| Sun, 14 Nov 2010 21:57:44 +0300 |
boris |
add old implementation of GeometricalCore |
| Wed, 10 Nov 2010 12:47:47 +0300 |
boris (netbook) |
draft of markup class added0.0 |
| Wed, 10 Nov 2010 12:01:26 +0300 |
boris (netbook) |
repeats: draft is completed, not tested |
| Tue, 09 Nov 2010 16:36:25 +0300 |
boris (netbook) |
repeats: read sequences from file |
| Tue, 09 Nov 2010 16:18:48 +0300 |
boris (netbook) |
add program to treat repeats |
| Tue, 09 Nov 2010 15:32:11 +0300 |
boris (netbook) |
hgignore .swp (vim swap) files |
| Tue, 09 Nov 2010 15:30:03 +0300 |
boris (netbook) |
fix |
| Tue, 09 Nov 2010 15:26:02 +0300 |
boris (netbook) |
DNA and DNAType classes added |
| Tue, 09 Nov 2010 15:05:06 +0300 |
boris (netbook) |
Sequence.file_slice to import slice of large sequence |
| Wed, 03 Nov 2010 19:26:35 +0300 |
boris |
fixes (caused by treating recursive imports) |
| Wed, 03 Nov 2010 19:13:53 +0300 |
boris |
rename file "project.py" to file "alignment.py" |
| Wed, 03 Nov 2010 19:12:23 +0300 |
boris |
Project --> Alignment |
| Wed, 03 Nov 2010 19:08:20 +0300 |
boris |
some local var name changes |
| Wed, 03 Nov 2010 19:01:50 +0300 |
boris |
Project.alignment --> Project.body |
| Tue, 02 Nov 2010 20:44:18 +0300 |
boris (netbook) |
fix |
| Tue, 02 Nov 2010 20:26:45 +0300 |
boris (netbook) |
fixes |
| Tue, 02 Nov 2010 19:09:00 +0300 |
boris (netbook) |
fix |
| Tue, 02 Nov 2010 19:04:38 +0300 |
boris (netbook) |
fix |
| Tue, 02 Nov 2010 18:56:57 +0300 |
boris (netbook) |
fix mistakes |
| Tue, 02 Nov 2010 17:28:44 +0300 |
boris (netbook) |
wt: new way of consts |
| Sun, 31 Oct 2010 18:04:29 +0300 |
boris (netbook) |
wt: added linking with boost_signals |
| Sun, 31 Oct 2010 17:36:04 +0300 |
boris (netbook) |
wt: compile.sh script improvements |
| Sun, 31 Oct 2010 13:10:45 +0300 |
boris |
wt: test: multiple const char* const turnes out not to cause problems |
| Sun, 31 Oct 2010 13:08:17 +0300 |
boris |
start to change geometrical_core tool on single-pdb-usage scheme |
| Thu, 28 Oct 2010 20:35:29 +0400 |
boris (netbook) |
pdb_auto_add: corrected check if true pdb-file exists |
| Thu, 28 Oct 2010 19:33:15 +0400 |
boris (netbook) |
fix fasta.long_line |
| Thu, 28 Oct 2010 19:26:02 +0400 |
boris (netbook) |
fix. memory leak fixed |
| Thu, 28 Oct 2010 15:16:24 +0400 |
boris (netbook) |
sec_str: don't run project.pdb_auto_add |
| Thu, 28 Oct 2010 08:14:23 +0400 |
boris |
fix. delete sequence.pdb_files on pdb_unload. however memory leak remains |
| Thu, 28 Oct 2010 00:51:27 +0400 |
boris |
pdb_unload added, but memory leaks remain |
| Thu, 28 Oct 2010 00:37:06 +0400 |
boris |
optimization: load the PDB file only one time |
| Wed, 27 Oct 2010 08:25:11 +0400 |
boris |
implemented |
| Tue, 26 Oct 2010 22:23:09 +0400 |
boris |
fix project.secstr |
| Tue, 26 Oct 2010 21:53:23 +0400 |
boris |
idea implemented: pdb and sec_str data moved from monomer to sequence |
| Tue, 26 Oct 2010 13:32:19 +0400 |
boris (netbook) |
idea to prevent lack of memory |
| Tue, 26 Oct 2010 00:40:36 +0400 |
boris (netbook) |
day commit -- a lot of changes |
