| age |
author |
description |
| Sun, 14 Nov 2010 21:57:44 +0300 |
boris |
add old implementation of GeometricalCore |
| Wed, 10 Nov 2010 12:47:47 +0300 |
boris (netbook) |
draft of markup class added0.0 |
| Wed, 10 Nov 2010 12:01:26 +0300 |
boris (netbook) |
repeats: draft is completed, not tested |
| Tue, 09 Nov 2010 16:36:25 +0300 |
boris (netbook) |
repeats: read sequences from file |
| Tue, 09 Nov 2010 16:18:48 +0300 |
boris (netbook) |
add program to treat repeats |
| Tue, 09 Nov 2010 15:32:11 +0300 |
boris (netbook) |
hgignore .swp (vim swap) files |
| Tue, 09 Nov 2010 15:30:03 +0300 |
boris (netbook) |
fix |
| Tue, 09 Nov 2010 15:26:02 +0300 |
boris (netbook) |
DNA and DNAType classes added |
| Tue, 09 Nov 2010 15:05:06 +0300 |
boris (netbook) |
Sequence.file_slice to import slice of large sequence |
| Wed, 03 Nov 2010 19:26:35 +0300 |
boris |
fixes (caused by treating recursive imports) |
| Wed, 03 Nov 2010 19:13:53 +0300 |
boris |
rename file "project.py" to file "alignment.py" |
| Wed, 03 Nov 2010 19:12:23 +0300 |
boris |
Project --> Alignment |
| Wed, 03 Nov 2010 19:08:20 +0300 |
boris |
some local var name changes |
| Wed, 03 Nov 2010 19:01:50 +0300 |
boris |
Project.alignment --> Project.body |
| Tue, 02 Nov 2010 20:44:18 +0300 |
boris (netbook) |
fix |
| Tue, 02 Nov 2010 20:26:45 +0300 |
boris (netbook) |
fixes |
| Tue, 02 Nov 2010 19:09:00 +0300 |
boris (netbook) |
fix |
| Tue, 02 Nov 2010 19:04:38 +0300 |
boris (netbook) |
fix |
| Tue, 02 Nov 2010 18:56:57 +0300 |
boris (netbook) |
fix mistakes |
| Tue, 02 Nov 2010 17:28:44 +0300 |
boris (netbook) |
wt: new way of consts |
| Sun, 31 Oct 2010 18:04:29 +0300 |
boris (netbook) |
wt: added linking with boost_signals |
| Sun, 31 Oct 2010 17:36:04 +0300 |
boris (netbook) |
wt: compile.sh script improvements |
| Sun, 31 Oct 2010 13:10:45 +0300 |
boris |
wt: test: multiple const char* const turnes out not to cause problems |
| Sun, 31 Oct 2010 13:08:17 +0300 |
boris |
start to change geometrical_core tool on single-pdb-usage scheme |
| Thu, 28 Oct 2010 20:35:29 +0400 |
boris (netbook) |
pdb_auto_add: corrected check if true pdb-file exists |
| Thu, 28 Oct 2010 19:33:15 +0400 |
boris (netbook) |
fix fasta.long_line |
| Thu, 28 Oct 2010 19:26:02 +0400 |
boris (netbook) |
fix. memory leak fixed |
| Thu, 28 Oct 2010 15:16:24 +0400 |
boris (netbook) |
sec_str: don't run project.pdb_auto_add |
| Thu, 28 Oct 2010 08:14:23 +0400 |
boris |
fix. delete sequence.pdb_files on pdb_unload. however memory leak remains |
| Thu, 28 Oct 2010 00:51:27 +0400 |
boris |
pdb_unload added, but memory leaks remain |
| Thu, 28 Oct 2010 00:37:06 +0400 |
boris |
optimization: load the PDB file only one time |
| Wed, 27 Oct 2010 08:25:11 +0400 |
boris |
implemented |
| Tue, 26 Oct 2010 22:23:09 +0400 |
boris |
fix project.secstr |
| Tue, 26 Oct 2010 21:53:23 +0400 |
boris |
idea implemented: pdb and sec_str data moved from monomer to sequence |
| Tue, 26 Oct 2010 13:32:19 +0400 |
boris (netbook) |
idea to prevent lack of memory |
| Tue, 26 Oct 2010 00:40:36 +0400 |
boris (netbook) |
day commit -- a lot of changes |
| Mon, 25 Oct 2010 13:30:11 +0400 |
boris (netbook) |
documentation improvements |
| Mon, 25 Oct 2010 00:03:35 +0400 |
boris |
everwhere: mkstemp --> NamedTemporaryFile. unlink useless temp files |
| Sun, 24 Oct 2010 23:17:24 +0400 |
boris |
documentation improvements |
| Sun, 24 Oct 2010 23:12:15 +0400 |
boris |
documentation improvements |
| Sun, 24 Oct 2010 22:25:36 +0400 |
boris |
lib: superimpose comleted, pdb_save in progress... |
| Sun, 24 Oct 2010 20:33:54 +0400 |
boris |
fix |
| Sun, 24 Oct 2010 20:31:07 +0400 |
boris |
fixes. GC: input msf added |
| Sun, 24 Oct 2010 19:05:31 +0400 |
boris |
project.from_fasta improvements |
| Sun, 24 Oct 2010 18:40:39 +0400 |
boris |
geomatrical_core: fasta and msf output |
| Sun, 24 Oct 2010 18:24:21 +0400 |
boris |
geometrical_core: list output |
| Sun, 24 Oct 2010 18:15:41 +0400 |
boris |
geometrical_core.py: run building of GCs |
| Sun, 24 Oct 2010 18:12:21 +0400 |
boris |
sequence.pdb_auto_add |
| Sun, 24 Oct 2010 17:29:59 +0400 |
boris |
allpy_pdb: new fasta id parsing function |
| Sun, 24 Oct 2010 17:06:15 +0400 |
boris |
block, project: gap charecter can be changed, when save to fasta |
| Sun, 24 Oct 2010 16:58:06 +0400 |
boris |
geometrical_core: add ugly validators |
| Sun, 24 Oct 2010 16:30:44 +0400 |
boris |
geometrical_core: parser completed |
| Sun, 24 Oct 2010 11:54:02 +0400 |
boris |
geometrical core fasta output |
| Sun, 24 Oct 2010 11:44:11 +0400 |
boris |
lib.block remove useless import copy |
| Sun, 24 Oct 2010 11:42:21 +0400 |
boris |
lib.block -- copy of sequences --> link to old sequences, when create from block |
| Sun, 24 Oct 2010 10:59:38 +0400 |
boris |
lib.block.__init__ explicit copy |
| Sun, 24 Oct 2010 00:32:48 +0400 |
boris |
geometrical_cores: ac_count -- -1 means infinity |
| Sun, 24 Oct 2010 00:26:18 +0400 |
boris |
broken: lib::block::geometrical_cores returns list of blocks |
| Sun, 24 Oct 2010 00:02:24 +0400 |
boris |
geometrical_core -> test.py |
| Sat, 23 Oct 2010 23:57:51 +0400 |
boris |
broken: lib::block::geometrical_core -> geometrical_cores (GC -> GCs) |
