| age |
author |
description |
| Fri, 09 Mar 2012 00:11:16 +0400 |
Boris Nagaev |
pair-cores/web is compatible with Wt 3.1.2; no openssl and curl deps |
| Tue, 06 Mar 2012 22:40:22 +0400 |
Boris Nagaev |
allpy/structure: remove useless import of a code from Bio.PDB.DSSP |
| Tue, 06 Mar 2012 22:38:54 +0400 |
Boris Nagaev |
SequenceSecondaryStructureMarkup: note that old dssp program must be used |
| Tue, 06 Mar 2012 20:29:45 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Tue, 06 Mar 2012 20:29:34 +0400 |
Daniil Alexeyevsky |
Added generic alignment & sequence markup classes for atomic types: int, str, char, float, bool -- and tests for them (see #94,#55) |
| Tue, 06 Mar 2012 19:23:24 +0400 |
Boris Nagaev |
structure, blocks_to_homology: sure not to add 'number' markup multiple times |
| Tue, 06 Mar 2012 19:21:59 +0400 |
Boris Nagaev |
structure, ignore_one_ss: fix a crash for alignments of >=3 sequences |
| Tue, 06 Mar 2012 16:08:49 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Tue, 06 Mar 2012 16:07:36 +0400 |
Daniil Alexeyevsky |
Added util markup_to_html.py that outputs simple HTML table with marked up alignment |
| Tue, 06 Mar 2012 10:14:50 +0400 |
Boris Nagaev |
pair-cores/web: add boost >= 1.44 dep to README.rst file |
| Sun, 04 Mar 2012 18:55:59 +0400 |
Boris Nagaev |
pair-cores/web: add Reset and Refresh buttons |
| Sun, 04 Mar 2012 02:03:31 +0400 |
Boris Nagaev |
pair-cores/web: fix ``environment'' target of Makefile |
| Sun, 04 Mar 2012 01:19:54 +0400 |
Boris Nagaev |
pair-cores/web: update wt-classes to 1.3.3 |
| Sun, 04 Mar 2012 01:14:28 +0400 |
Boris Nagaev |
pair-cores/web: add some css |
| Sun, 04 Mar 2012 00:31:09 +0400 |
Boris Nagaev |
pair-cores/web: improve check that only one of (alignment, markup) was provided |
| Sun, 04 Mar 2012 00:30:14 +0400 |
Boris Nagaev |
pair-cores/web: add contents from blocks3d web interface |
| Sun, 04 Mar 2012 00:04:28 +0400 |
Boris Nagaev |
pair-cores/web: rename variable blocks3d_html to high_html |
| Sun, 04 Mar 2012 00:01:37 +0400 |
Boris Nagaev |
pair-cores/web: add translations |
| Sat, 03 Mar 2012 23:06:17 +0400 |
Boris Nagaev |
pair-cores/web: fix ``environment'' target of Makefile |
| Sat, 03 Mar 2012 22:58:13 +0400 |
Boris Nagaev |
pair-cores/web: update wt-classes to 1.3.2 |
| Sat, 03 Mar 2012 22:51:15 +0400 |
Boris Nagaev |
pair-cores/web: fix ignore_one_ss argument passing |
| Sat, 03 Mar 2012 02:28:03 +0400 |
Boris Nagaev |
pair-cores/web: line edit inputs are mandatory |
| Sat, 03 Mar 2012 02:24:39 +0400 |
Boris Nagaev |
pair-cores/web: add default values to line edit inputs |
| Sat, 03 Mar 2012 01:52:46 +0400 |
Boris Nagaev |
add web interface for pair-cores |
| Sat, 03 Mar 2012 16:05:58 +0400 |
Boris Nagaev |
pair-cores: split discontinuous blocks from highest_blocks() to continuous parts |
| Sat, 03 Mar 2012 15:45:13 +0400 |
Boris Nagaev |
pair_cores: revert try-catch in main(), removed accidentally in ce4ccbd2a1c2 |
| Fri, 02 Mar 2012 10:12:27 +0400 |
Boris Nagaev |
update NEWS with old changes |
| Fri, 02 Mar 2012 10:07:50 +0400 |
Boris Nagaev |
update NEWS with latest changes |
| Thu, 01 Mar 2012 01:11:34 +0400 |
Boris Nagaev |
pair_cores: add --pair-timeout (Bron-Kerbosh (pair cores) timeout) |
| Thu, 01 Mar 2012 01:05:24 +0400 |
Boris Nagaev |
pair_cores: print default values of command line args in help message |
| Thu, 01 Mar 2012 00:24:08 +0400 |
Boris Nagaev |
pair_cores: add another high blocks building algo (or blocks3d algo optionally) |
| Wed, 29 Feb 2012 22:40:54 +0400 |
Boris Nagaev |
allpy/structure: add method blocks_from_homology() |
| Wed, 29 Feb 2012 15:30:45 +0400 |
Boris Nagaev |
allpy/homology: fix a typo in docs |
| Wed, 29 Feb 2012 15:16:46 +0400 |
Boris Nagaev |
pair_cores: add blocks3d outputs (high blocks) |
| Wed, 29 Feb 2012 15:13:12 +0400 |
Boris Nagaev |
allpy/structure: add ``parts'' argument to blocks3d() |
| Wed, 29 Feb 2012 11:39:32 +0400 |
Boris Nagaev |
pair_cores.py: add -w option (min_width) |
| Wed, 29 Feb 2012 11:37:23 +0400 |
Boris Nagaev |
add class Column to */protein_pdb.py |
| Wed, 29 Feb 2012 11:00:56 +0400 |
Boris Nagaev |
allpy/structure: add description of ignore_one_ss argument to .blocks3d() |
| Sat, 25 Feb 2012 23:47:44 +0400 |
Daniil Alexeyevsky |
New Debian build: 1.4.2-3 for blocks3d* packages only1.4.2 |
| Sat, 25 Feb 2012 22:08:17 +0400 |
Boris Nagaev |
blocks3d: do not use pymol output feature of allpy trunc1.4.2 |
| Sat, 25 Feb 2012 22:06:38 +0400 |
Boris Nagaev |
pair-cores and geometrical-core: do not use ignore_one_ss feature of allpy trunc1.4.2 |
| Sat, 25 Feb 2012 21:56:17 +0400 |
Boris Nagaev |
blocks3d: do not use ignore_one_ss feature of allpy trunc1.4.2 |
| Sat, 25 Feb 2012 21:33:45 +0400 |
Boris Nagaev |
revert regression, introduced in 61bafa71cae7 for compatibility with allpy 1.4.0 |
| Sat, 25 Feb 2012 20:31:42 +0400 |
Daniil Alexeyevsky |
Added note to ss markup that it is going to be eliminated soon |
| Sat, 25 Feb 2012 20:30:13 +0400 |
Daniil Alexeyevsky |
Fix test for ss markup (which will anyway be eliminated soon); (see #138) |
| Sat, 25 Feb 2012 20:16:51 +0400 |
Daniil Alexeyevsky |
allpy.processors: use NamedTemporaryFile(..., delete=True) in favour of removing the files manually (closes #137) |
| Sat, 25 Feb 2012 19:25:42 +0400 |
Daniil Alexeyevsky |
Fixed reference to Column in allpy.base, which referred to closure instead of self.types (closes #138) |
| Sat, 25 Feb 2012 19:11:32 +0400 |
Daniil Alexeyevsky |
Automated merge |
| Sat, 25 Feb 2012 18:44:05 +0400 |
Daniil Alexeyevsky |
More sensible error message for _append_columns on an empty Block |
| Sat, 25 Feb 2012 18:54:15 +0400 |
Daniil Alexeyevsky |
New debian package build for python-allpy1.4.0 |
| Sat, 25 Feb 2012 18:50:58 +0400 |
Daniil Alexeyevsky |
Backported fixes to Alignment.realign(), Markup.remove(), processors.Muscle(), *.Column.types from default branch (revs [853],[931],[932],[933],[934],[952],[954])1.4.0 |
| Sat, 25 Feb 2012 17:42:45 +0400 |
Daniil Alexeyevsky |
Exported some unknown bnagaevs changes of blocks3d as a new debian package1.4.2 |
| Wed, 15 Feb 2012 19:54:06 +0400 |
Boris Nagaev |
make blocks3d compatible with allpy 1.4.01.4.2 |
| Wed, 15 Feb 2012 19:44:59 +0400 |
Boris Nagaev |
blocks-3d/wt: fix fasta example (unindent it)1.4.2 |
| Wed, 15 Feb 2012 19:25:30 +0400 |
Daniil Alexeyevsky |
pseudo-release 1.4.2 for the sake of updating blocks3d web-interface1.4.2 |
| Wed, 15 Feb 2012 19:54:06 +0400 |
Boris Nagaev |
make blocks3d compatible with allpy 1.4.0 |
| Wed, 15 Feb 2012 19:44:59 +0400 |
Boris Nagaev |
blocks-3d/wt: fix fasta example (unindent it) |
| Wed, 15 Feb 2012 16:37:23 +0400 |
Daniil Alexeyevsky |
Added SequenceCharMarkup to use with user-generated one-letter markups that can be saved to fasta later (see utils/markup_to_file.py) |
| Wed, 15 Feb 2012 16:21:51 +0400 |
Daniil Alexeyevsky |
Debugged utils/markup_to_file; some bugs may still be there |
| Tue, 07 Feb 2012 15:38:22 +0400 |
Daniil Alexeyevsky |
Marked utils/markup_to_file.py as executable |
