| age |
author |
description |
| Fri, 23 Sep 2011 13:41:42 +0400 |
Boris Nagaev |
blocks3d/www: fix false negatives in conservative columns |
| Mon, 19 Sep 2011 20:52:53 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Mon, 19 Sep 2011 20:06:03 +0400 |
Daniil Alexeyevsky |
Added .hgeol rules for EVERY file in the repository (so it seems). closes #118 |
| Mon, 19 Sep 2011 19:43:42 +0400 |
Daniil Alexeyevsky |
Changed EOLs in .hgignore to UNIX style, see #118 |
| Sun, 18 Sep 2011 16:32:59 +0400 |
Boris Nagaev |
Geometrical core improvement: ignore cores, owned by one SS element |
| Sun, 18 Sep 2011 15:11:49 +0400 |
Boris Nagaev |
add test for secondary structure markup for sequence |
| Sun, 18 Sep 2011 15:08:40 +0400 |
Boris Nagaev |
add secondary structure markup for sequence |
| Sun, 18 Sep 2011 12:46:35 +0400 |
Boris Nagaev |
blocks3d/www: yui-compressor turned into optional dependency |
| Sun, 18 Sep 2011 12:38:10 +0400 |
Boris Nagaev |
DownloadPdb, CachedDownloadPdb: change case of pdb code to lower |
| Sun, 18 Sep 2011 12:32:38 +0400 |
Boris Nagaev |
CachedDownloadPdb: fix a bug causing most of downloaded pdb files not to save |
| Sun, 18 Sep 2011 12:23:57 +0400 |
Boris Nagaev |
blocks3d.py: add option -S not to save downloaded pdb to cache_dir |
| Sun, 18 Sep 2011 12:23:09 +0400 |
Boris Nagaev |
CachedDownloadPdb: add an argument not to save downloaded pdb to cache_dir |
| Sun, 18 Sep 2011 11:57:45 +0400 |
Boris Nagaev |
blobks3d.py: default don't use full Bron-Kerbosh at all on the first stage, only use fast algorithm |
| Thu, 15 Sep 2011 23:01:51 +0400 |
Boris Nagaev |
blocks3d/www: add downloaded utf8_encode.js to .hgignore |
| Thu, 15 Sep 2011 17:50:13 +0400 |
Boris Nagaev |
blocks3d: cache downloaded PDB's by default |
| Thu, 15 Sep 2011 17:44:53 +0400 |
Boris Nagaev |
fix blocks3d/www: add changes forgotten while migrating to Makefile |
| Thu, 15 Sep 2011 16:27:07 +0400 |
Daniil Alexeyevsky |
Removed redundant call to blocks3d/www Makefile from the root Makefile |
| Thu, 15 Sep 2011 15:42:50 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Thu, 15 Sep 2011 15:42:37 +0400 |
Daniil Alexeyevsky |
Compiling blocks3d-wt is the almost last target in the Makefile (this is the most optional item after running tests) |
| Wed, 03 Aug 2011 17:19:56 +0400 |
Boris Burkov |
Merge with Danya |
| Fri, 29 Jul 2011 19:09:22 +0400 |
Boris Burkov |
Manual merge between Burkov and central |
| Fri, 29 Jul 2011 19:08:21 +0400 |
Boris Burkov |
Post-MCCMB state of blocks_finder |
| Fri, 29 Jul 2011 20:59:28 +0400 |
Daniil Alexeyevsky |
Removed "doc" target from default Makefile targets. |
| Fri, 29 Jul 2011 11:17:53 +0400 |
Daniil Alexeyevsky |
Added tag 1.4.0 for changeset 3e269d33a386 |
| Fri, 29 Jul 2011 11:17:33 +0400 |
Daniil Alexeyevsky |
Removed tag 1.4.0 |
| Tue, 26 Jul 2011 17:49:31 +0400 |
Daniil Alexeyevsky |
Makefile: tests should be the last rule among the default rules, not the first! |
| Tue, 26 Jul 2011 17:48:23 +0400 |
Daniil Alexeyevsky |
Fixed Makefile tests rule to work when invoked from other directory (used in buildbot) |
| Tue, 26 Jul 2011 16:28:53 +0400 |
Daniil Alexeyevsky |
Punctuation fix in docs |
| Mon, 25 Jul 2011 18:25:50 +0400 |
Daniil Alexeyevsky |
Added a primitive logo for allpy |
| Mon, 25 Jul 2011 14:40:41 +0400 |
Daniil Alexeyevsky |
Added fileio.BioPythonFile as a method to parse unknown file formats [closes #106] |
| Thu, 21 Jul 2011 18:34:27 +0400 |
Daniil Alexeyevsky |
'make tests' now also searches for doctests and runs them. |
| Thu, 21 Jul 2011 18:29:42 +0400 |
Daniil Alexeyevsky |
Added allpy.util.open(), a wrapper around open(), which allows "-" as a filename to signify stdin or stdout |
| Thu, 21 Jul 2011 16:41:08 +0400 |
Daniil Alexeyevsky |
Removed pair_cores/html.htm and blocks3d/html.htm, whcih were autogenerated files. Looks like this closes #93. |
| Thu, 21 Jul 2011 16:25:15 +0400 |
Daniil Alexeyevsky |
Removed pytale, sandbox, sec_str, since they are not working, there is no work on them going on and it is not likely that they will fork in any near future (see #99) |
| Thu, 21 Jul 2011 16:01:37 +0400 |
Daniil Alexeyevsky |
Added ignore rules for files removed in several preceeding commits (see #93) |
| Thu, 21 Jul 2011 15:18:42 +0400 |
Daniil Alexeyevsky |
Removed downloaded PDB-files from test/, they were not used anywhere too (see #93) |
| Thu, 21 Jul 2011 14:50:20 +0400 |
Daniil Alexeyevsky |
Removed some downloaded files from blocks3d/www (see #93) |
| Thu, 21 Jul 2011 14:23:12 +0400 |
Daniil Alexeyevsky |
Removed some of downloaded files fomr blocks3d/wt (see #93) |
| Thu, 21 Jul 2011 13:51:01 +0400 |
Daniil Alexeyevsky |
Extracted part for updating allpy.data.codes from top-level Makefile. (code cleanup) |
| Thu, 21 Jul 2011 13:47:49 +0400 |
Daniil Alexeyevsky |
Updated docs sources for the recent additions |
| Thu, 21 Jul 2011 13:12:54 +0400 |
Daniil Alexeyevsky |
Allow markup to be tagged as saved / not saved (closes #83) |
| Wed, 20 Jul 2011 20:44:59 +0400 |
Daniil Alexeyevsky |
Added allpy.markups.MarkupIOMixin to simplify new saveable markups creation. Switched existing saveable makrups to using it. Tested. (closes #82) |
| Wed, 20 Jul 2011 19:17:03 +0400 |
Daniil Alexeyevsky |
Added call to blocks3d-www makefile target to debian package building rules (see #62) |
| Wed, 20 Jul 2011 19:09:31 +0400 |
Daniil Alexeyevsky |
Added blocks3d javascript builder target to the global Makefile (closes #62) |
| Wed, 20 Jul 2011 18:36:15 +0400 |
Daniil Alexeyevsky |
Removed allpy.data.codes from repository, since it is automatically generated anyway. (see #93) |
| Wed, 20 Jul 2011 18:29:18 +0400 |
Daniil Alexeyevsky |
Fixed versions in NEWS; added comment for 1.4.1 |
| Wed, 20 Jul 2011 17:41:14 +0400 |
Daniil Alexeyevsky |
Released 1.4.0. [closes #53] |
| Wed, 20 Jul 2011 17:40:45 +0400 |
Daniil Alexeyevsky |
Marked release date for 1.4.0 in debian/changelog and NEWS |
| Wed, 20 Jul 2011 03:05:06 +0200 |
boris |
blocks3d/wt: fix possible races in try_to_run() method of Blocks3DWidget |
| Wed, 20 Jul 2011 02:46:23 +0200 |
boris |
blocks3d/wt: fix a typo in variable name |
| Wed, 20 Jul 2011 02:42:04 +0200 |
boris |
blocks3d/wt: use vector instead of list as container for tasks |
| Wed, 20 Jul 2011 02:38:59 +0400 |
boris (kodomo) |
blocks3d/wt: suggest better filenames for downloading |
| Wed, 20 Jul 2011 02:02:50 +0400 |
boris (kodomo) |
pair_cores_all: do not break all workers if error occured in one worker |
| Tue, 19 Jul 2011 20:04:22 +0400 |
Daniil Alexeyevsky |
allpy.util.lazy_import: the returned value after first query should also be a usable value |
| Tue, 19 Jul 2011 20:01:36 +0400 |
Daniil Alexeyevsky |
allpy.base.default_gaps is now list instead of set, with first item being the preferred output gap symbol |
| Tue, 19 Jul 2011 19:57:34 +0400 |
Daniil Alexeyevsky |
allpy.util.lazy_import: added all the arguments that __import__ has |
| Tue, 19 Jul 2011 19:39:59 +0400 |
Daniil Alexeyevsky |
Added allpy.utils.lazy_import: a helper to break import loops less pervasively |
| Tue, 19 Jul 2011 14:40:22 +0400 |
Daniil Alexeyevsky |
Added deprecation warnings to the deprecated functions. |
| Mon, 18 Jul 2011 19:53:06 +0400 |
Daniil Alexeyevsky |
convert_homology: mapping of column numbers was totally wrong; fixed |
| Mon, 18 Jul 2011 19:26:21 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
