| age |
author |
description |
| Thu, 16 Dec 2010 01:25:54 +0300 |
Daniil Alexeyevsky |
Experimenting with styles of docstrings in allpy.base.Alignment (to be recognized by Sphinx) |
| Thu, 16 Dec 2010 01:13:01 +0300 |
Daniil Alexeyevsky |
Removed trailing spaces |
| Thu, 16 Dec 2010 01:12:06 +0300 |
Daniil Alexeyevsky |
Clean reimplementation of allpy.base.Alignment.from_fasta |
| Wed, 15 Dec 2010 23:45:11 +0300 |
Daniil Alexeyevsky |
Fixed spaces |
| Wed, 15 Dec 2010 23:44:25 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Wed, 15 Dec 2010 23:44:20 +0300 |
Daniil Alexeyevsky |
Added base.Sequence.from_fasta |
| Wed, 15 Dec 2010 21:51:01 +0300 |
boris (kodomo) |
repeats: improve parsing |
| Wed, 15 Dec 2010 21:30:25 +0300 |
Daniil Alexeyevsky |
Fixed ReST warnings from docstrings in allpy.base |
| Wed, 15 Dec 2010 20:40:10 +0300 |
Daniil Alexeyevsky |
Proper rna.Monomer, rna.MonomerType, rna.Sequence |
| Wed, 15 Dec 2010 20:39:18 +0300 |
Daniil Alexeyevsky |
Proper dna.Monomer, dna.MonomerType, dna.Sequence |
| Wed, 15 Dec 2010 20:32:00 +0300 |
Daniil Alexeyevsky |
Made allpy.protein conform to PEP8 |
| Wed, 15 Dec 2010 20:31:06 +0300 |
Daniil Alexeyevsky |
Added vim modeline to allpy.protein |
| Wed, 15 Dec 2010 20:26:56 +0300 |
Daniil Alexeyevsky |
Quick hack base.Alignment to resolve name errors in base |
| Wed, 15 Dec 2010 20:10:03 +0300 |
Daniil Alexeyevsky |
Removed base.Sequence.from_slice |
| Wed, 15 Dec 2010 20:06:27 +0300 |
Daniil Alexeyevsky |
base.Sequence major cleanup |
| Wed, 15 Dec 2010 19:19:11 +0300 |
Daniil Alexeyevsky |
Moved PDB parts of allpy.base.Sequence to allpy.pdb.Sequence |
| Wed, 15 Dec 2010 18:58:54 +0300 |
Daniil Alexeyevsky |
Converted base.Sequence.from_string to conform with new design |
| Wed, 15 Dec 2010 18:40:38 +0300 |
Daniil Alexeyevsky |
Removed line with trailing space to check mercurial hook |
| Wed, 15 Dec 2010 18:40:23 +0300 |
Daniil Alexeyevsky |
Added line with trailing space to check mercurial hook |
| Wed, 15 Dec 2010 18:30:19 +0300 |
Daniil Alexeyevsky |
Code cleanup: removed trailing spaces everywhere in the code |
| Wed, 15 Dec 2010 02:22:38 +0300 |
Daniil Alexeyevsky |
Fixed reference to module index in docs |
| Wed, 15 Dec 2010 02:13:30 +0300 |
Daniil Alexeyevsky |
Regenerated Sphinx autodocs cleaner. |
| Wed, 15 Dec 2010 01:51:52 +0300 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Wed, 15 Dec 2010 01:51:50 +0300 |
Daniil Alexeyevsky |
Trivial fixes to ReST in docstring markup |
| Wed, 15 Dec 2010 00:46:13 +0300 |
boris |
repeats: mistake in intersection determination fixed |
| Tue, 14 Dec 2010 21:25:22 +0300 |
Daniil Alexeyevsky |
Added protein.Monomer and protein.MonomerType as example of Monomer* subclassing |
| Tue, 14 Dec 2010 21:14:52 +0300 |
Daniil Alexeyevsky |
Removed obsolete modules |
| Tue, 14 Dec 2010 21:06:42 +0300 |
Daniil Alexeyevsky |
Moved contents of allpy.sequence into allpy.base |
| Tue, 14 Dec 2010 21:02:49 +0300 |
Daniil Alexeyevsky |
Moved contents of block.py to base.py without any changes. |
| Tue, 14 Dec 2010 20:51:53 +0300 |
Daniil Alexeyevsky |
Moved contents of allpy._monomer to allpy.base |
| Tue, 14 Dec 2010 20:05:13 +0300 |
Daniil Alexeyevsky |
Merge |
| Tue, 14 Dec 2010 20:00:58 +0300 |
Daniil Alexeyevsky |
Version with working sec_str |
| Tue, 14 Dec 2010 17:06:33 +0300 |
Daniil Alexeyevsky |
Minor fixes to ReST markup in allpy._monomernew-monomer |
| Tue, 14 Dec 2010 15:29:49 +0300 |
Daniil Alexeyevsky |
docs: added link to module indext (generated by sphinx-autopackage-script)new-monomer |
| Tue, 14 Dec 2010 15:29:19 +0300 |
Daniil Alexeyevsky |
Fixed ReST markup in allpy._monomer.Monomer docstring.new-monomer |
| Mon, 13 Dec 2010 22:16:37 +0300 |
Daniil Alexeyevsky |
Added autogenerated sphinx docsnew-monomer |
| Mon, 13 Dec 2010 22:16:04 +0300 |
Daniil Alexeyevsky |
Fixed ReST markup in allpy.data.codesnew-monomer |
| Mon, 13 Dec 2010 21:27:48 +0300 |
Daniil Alexeyevsky |
Syntax error in allpy._monomernew-monomer |
| Mon, 13 Dec 2010 20:12:11 +0300 |
Daniil Alexeyevsky |
Incompatible changes to Monomer interfaces.new-monomer |
| Tue, 07 Dec 2010 20:22:19 +0300 |
boris (kodomo) |
allpy: collective improvement session |
| Sat, 04 Dec 2010 00:19:17 +0300 |
boris |
allpy.base: add alignment (old version) |
| Sat, 04 Dec 2010 00:18:50 +0300 |
boris |
allpy.pdb: move documentation to begin of file |
| Sat, 04 Dec 2010 00:08:12 +0300 |
boris |
allpy: allpy_data --> allpy.data |
| Sat, 04 Dec 2010 00:04:48 +0300 |
boris |
allpy: allpy_pdb --> allpy.pdb |
| Fri, 03 Dec 2010 23:37:16 +0300 |
boris |
allpy: monomers improvements |
| Fri, 03 Dec 2010 23:24:43 +0300 |
boris |
allpy: monomers completed |
| Fri, 03 Dec 2010 22:57:37 +0300 |
boris |
allpy: add documentation to base.Sequence |
| Fri, 03 Dec 2010 22:54:48 +0300 |
boris |
allpy: correct unworking code |
| Fri, 03 Dec 2010 22:28:06 +0300 |
boris (netbook) |
allpy: function rename |
| Fri, 03 Dec 2010 22:24:00 +0300 |
boris (netbook) |
allpy: protein.py, dna.py, rna.py drafts |
| Fri, 03 Dec 2010 22:19:13 +0300 |
boris (netbook) |
allpy: add base.py1.1.0 |
| Fri, 03 Dec 2010 22:10:53 +0300 |
boris (netbook) |
allpy: fix old changes in main classess attributes |
| Tue, 30 Nov 2010 17:11:25 +0300 |
boris (netbook) |
rm source.py |
| Tue, 30 Nov 2010 17:11:03 +0300 |
boris (netbook) |
allpy: add protein and source classes |
| Tue, 30 Nov 2010 17:10:25 +0300 |
boris (netbook) |
allpy: start moving to new class interfaces |
| Sun, 28 Nov 2010 17:40:11 +0300 |
boris |
repeats: fix bug with same lines in output file |
| Sat, 27 Nov 2010 22:42:36 +0300 |
boris |
repeats: remove useless file |
| Sat, 27 Nov 2010 22:41:18 +0300 |
boris |
repeats: 1) Repeat --> Interval, RepeatGroup --> IntervalGroup |
| Sat, 27 Nov 2010 21:44:26 +0300 |
boris |
Backed out changeset 684ff5579345 |
| Sat, 27 Nov 2010 21:44:11 +0300 |
boris |
repeats: join fragments before joining |
