| age |
author |
description |
| Fri, 29 Apr 2011 16:35:24 +0400 |
boris (kodomo) |
Automated merge with ssh://kodomo/allpy |
| Fri, 29 Apr 2011 16:21:23 +0400 |
boris (kodomo) |
pair_cores: add rasmol_output.py to generate rasmol script and superimposition |
| Fri, 29 Apr 2011 16:17:55 +0400 |
boris (kodomo) |
pair_score/score.py: fixes and inprovements |
| Fri, 29 Apr 2011 16:04:51 +0400 |
boris (kodomo) |
allpy/structure.py: move superimpose(+fix) and save_pdb to AlignmentMixin |
| Fri, 29 Apr 2011 15:43:42 +0400 |
boris (kodomo) |
allpy/config.py: change min_width=4 |
| Tue, 05 Apr 2011 23:37:39 +0400 |
boris (kodomo) |
pair_cores: change min core size from 10 to 5 |
| Tue, 05 Apr 2011 23:35:31 +0400 |
boris (kodomo) |
pair_cores.py: skip joining cores |
| Tue, 05 Apr 2011 23:14:06 +0400 |
boris (kodomo) |
paired_cores/score_all.py: improvement |
| Tue, 05 Apr 2011 23:11:41 +0400 |
boris (kodomo) |
paired_cores/score.py: change method of score evaluation |
| Fri, 15 Apr 2011 22:34:45 +0400 |
Daniil Alexeyevsky |
Renamed debian package geometrical-core -> geometrical-core2 |
| Fri, 15 Apr 2011 22:08:32 +0400 |
Daniil Alexeyevsky |
Fixed dependency information for geometrical-core |
| Fri, 15 Apr 2011 21:54:35 +0400 |
Daniil Alexeyevsky |
Fixed installation of geometrical-core since it requires some local modules imported |
| Fri, 15 Apr 2011 21:42:08 +0400 |
Daniil Alexeyevsky |
Updated debian changelog for version 1.3.0 |
| Fri, 15 Apr 2011 21:10:16 +0400 |
Daniil Alexeyevsky |
NEWS file grows upwards - not in README.devel |
| Fri, 15 Apr 2011 21:05:50 +0400 |
Daniil Alexeyevsky |
Added a few words about NEWS file to README.devel |
| Fri, 15 Apr 2011 20:57:33 +0400 |
Daniil Alexeyevsky |
Added tag 1.3.0 for changeset b730512ecae5 |
| Fri, 15 Apr 2011 20:57:27 +0400 |
Daniil Alexeyevsky |
Added NEWS file1.3.0 |
| Fri, 15 Apr 2011 20:46:05 +0400 |
Daniil Alexeyevsky |
Added tag 1.2.0 for changeset 364232e42888 |
| Fri, 15 Apr 2011 20:44:29 +0400 |
Daniil Alexeyevsky |
Added tag 1.1.0 for changeset 292b74612a42 |
| Sun, 03 Apr 2011 17:05:32 +0400 |
boris (kodomo) |
pair_cores_all.py: close openned files to avoid error |
| Sun, 03 Apr 2011 17:00:38 +0400 |
boris (kodomo) |
structure.py: add test argument to add_surrounded_columns() |
| Sun, 03 Apr 2011 16:58:39 +0400 |
boris (kodomo) |
structure.py: add test argument to add_surrounded_columns() |
| Sat, 02 Apr 2011 17:04:11 +0400 |
boris (kodomo) |
pair_cores: multiprocessing, no forking |
| Fri, 01 Apr 2011 17:14:26 +0400 |
boris (kodomo) |
pair_cores: improve score.py |
| Fri, 01 Apr 2011 17:05:13 +0400 |
boris (kodomo) |
structure.py: fix blocks_from_file() |
| Sat, 26 Mar 2011 10:48:11 +0300 |
boris (kodomo) |
add pair_cores program package |
| Sat, 26 Mar 2011 02:18:36 +0300 |
boris (kodomo) |
structure.py: fix set_pdb_chain() |
| Sat, 26 Mar 2011 02:16:01 +0300 |
boris (kodomo) |
fix default values of set_pdb_chain() parameters |
| Sat, 26 Mar 2011 01:24:21 +0300 |
boris (kodomo) |
structure.py: add join parameter to pair_cores_parts() |
| Sat, 26 Mar 2011 01:15:35 +0300 |
boris (kodomo) |
fix syntax error |
| Sat, 26 Mar 2011 01:13:56 +0300 |
boris (kodomo) |
structure.py: add min_core_size parameter to pair_core_parts() |
| Sat, 26 Mar 2011 01:09:05 +0300 |
boris (kodomo) |
structure.py: fix add_surrounded_columns() |
| Sat, 26 Mar 2011 00:42:07 +0300 |
Daniil Alexeyevsky |
Probably fixed fileio.EmbossFile.write_strings error in unlink |
| Sat, 26 Mar 2011 00:34:30 +0300 |
boris (kodomo) |
structure.py: improve set_pdb_chain() |
| Sat, 26 Mar 2011 00:18:15 +0300 |
Daniil Alexeyevsky |
Typo in allpy.fileio.write_strings |
| Sat, 26 Mar 2011 00:15:56 +0300 |
Daniil Alexeyevsky |
Fixed alignment output: don't use 'write_string', since in only works for fasta |
| Fri, 25 Mar 2011 23:12:21 +0300 |
boris (kodomo) |
structure.py: opportunity not to store entire pdb info, xyz only |
| Fri, 25 Mar 2011 23:09:58 +0300 |
boris (kodomo) |
Automated merge with ssh://kodomo/allpy |
| Thu, 17 Mar 2011 17:48:37 +0300 |
boris (kodomo) |
fix previous commit |
| Thu, 17 Mar 2011 17:03:27 +0300 |
boris (kodomo) |
structure: set_pdb_chain() allows 2 mutations in pdb sequence |
| Thu, 24 Mar 2011 21:21:11 +0300 |
Daniil Alexeyevsky |
Merge in favour of rewritten fileio |
| Thu, 24 Mar 2011 21:15:48 +0300 |
Daniil Alexeyevsky |
Added test/test_usecases to use usecase examples as unit tests |
| Thu, 24 Mar 2011 21:13:54 +0300 |
Daniil Alexeyevsky |
Clean and simple rewrite of usecase3 |
| Thu, 24 Mar 2011 21:10:12 +0300 |
Daniil Alexeyevsky |
Bug in base.Alignment.remove_gap_columns (reversed(enumerate(...)) is surprisingly illegal python construct) |
| Thu, 24 Mar 2011 20:46:06 +0300 |
Daniil Alexeyevsky |
Clean rewrite of fileio |
| Thu, 24 Mar 2011 20:45:32 +0300 |
Daniil Alexeyevsky |
Don't import fileio in blocks3d, since it's not used there |
| Thu, 24 Mar 2011 20:43:23 +0300 |
Daniil Alexeyevsky |
usecase1: write test file to stdout to ease testing and litter less |
| Thu, 24 Mar 2011 20:36:19 +0300 |
Daniil Alexeyevsky |
Fixed usecase1 to use realign instead of process |
| Thu, 24 Mar 2011 20:22:46 +0300 |
boris (kodomo) |
fix bug in continuous_blocks() |
| Thu, 17 Mar 2011 16:56:48 +0300 |
boris (kodomo) |
processors: add no_gaps parameter to Muscle processor |
| Thu, 17 Mar 2011 11:41:15 +0300 |
boris (kodomo) |
backout (incorrect commit) |
| Thu, 17 Mar 2011 11:39:58 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Thu, 17 Mar 2011 11:26:53 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Wed, 16 Mar 2011 22:50:50 +0300 |
boris (kodomo) |
structure: fix bug in set_pdb_chain() |
| Wed, 16 Mar 2011 22:36:48 +0300 |
boris (kodomo) |
fix a bug |
| Wed, 16 Mar 2011 22:31:24 +0300 |
boris (kodomo) |
minor fix: use column2pos method |
| Wed, 16 Mar 2011 22:26:42 +0300 |
boris (kodomo) |
move generation of html to method of structure.BlockMixin |
| Wed, 16 Mar 2011 22:15:19 +0300 |
boris (kodomo) |
fix blocks_to_file() |
| Wed, 16 Mar 2011 22:04:58 +0300 |
boris (kodomo) |
add methods to save and load list of blocks from file |
| Wed, 16 Mar 2011 21:34:06 +0300 |
boris (kodomo) |
structure: move column2pos to separate function |
