| age |
author |
description |
| Tue, 20 Mar 2012 18:29:00 +0400 |
Boris Nagaev |
pair-cores/web: clarify pymol output for pair cores |
| Tue, 20 Mar 2012 01:39:28 +0400 |
Boris Nagaev |
Merge pair-cores new option for pymol high blocks from default into 1.4.21.4.2 |
| Mon, 19 Mar 2012 15:22:32 +0400 |
Boris Nagaev |
pair-cores: add a patch upgrading allpy.structure1.4.2 |
| Mon, 19 Mar 2012 13:52:56 +0400 |
Boris Nagaev |
Merged utils, pair_cores, blocks3d and geometrical-core from 9ae23 into 1.4.21.4.2 |
| Mon, 19 Mar 2012 23:23:40 +0400 |
Boris Nagaev |
pair-cores/web: add option to output high blocks in pymol |
| Mon, 19 Mar 2012 22:56:16 +0400 |
Boris Nagaev |
pair-cores: add option to output high blocks in pymol |
| Fri, 16 Mar 2012 23:43:28 +0400 |
Boris Nagaev |
blocks_to_pymol(): orient visible (cosmetic improvement) |
| Fri, 16 Mar 2012 23:41:59 +0400 |
Boris Nagaev |
blocks_to_pymol(): take alter code into account while fitting |
| Fri, 16 Mar 2012 16:45:00 +0400 |
Daniil Alexeyevsky |
Merged allpy & tests from 1.4.0 into 1.4.21.4.2 |
| Fri, 16 Mar 2012 16:06:18 +0400 |
Boris Nagaev |
blocks_to_pymol(): add pymol command by_block |
| Fri, 16 Mar 2012 15:07:14 +0400 |
Boris Nagaev |
blocks_to_pymol(): add selections for blocks |
| Fri, 16 Mar 2012 00:54:26 +0400 |
Boris Nagaev |
blocks_to_pymol(): fix the order of pair_fit arguments |
| Fri, 16 Mar 2012 00:20:00 +0400 |
Boris Nagaev |
blocks_to_pymol(): hide atoms, absent in the alignment |
| Fri, 16 Mar 2012 00:10:42 +0400 |
Boris Nagaev |
blocks_to_pymol(): show blocks with cartoon, other with transparent sticks |
| Thu, 15 Mar 2012 23:17:23 +0400 |
Boris Nagaev |
blocks_to_pymol(): use all blocks, not only the first one |
| Thu, 15 Mar 2012 23:07:25 +0400 |
Boris Nagaev |
blocks_to_pymol(): hide all except involved chains, represented as cartoon |
| Thu, 15 Mar 2012 19:50:25 +0400 |
Boris Nagaev |
allpy/structure.py: cosmetic improvements of blocks_to_pymol()'s implementation |
| Thu, 15 Mar 2012 19:47:56 +0400 |
Boris Nagaev |
allpy/structure.py: cosmetic improvements of blocks_to_pymol()'s implementation |
| Wed, 14 Mar 2012 17:54:01 +0400 |
Boris Nagaev |
pair-cores: fix program fault if no high blocks were found |
| Sun, 11 Mar 2012 16:22:53 +0400 |
Boris Nagaev |
pair-cores/web: true order of libs and objects for linker |
| Fri, 09 Mar 2012 16:56:24 +0400 |
Boris Nagaev |
pair-cores: filter out blocks of 1 sequnce (new high blocks algorithm) |
| Fri, 09 Mar 2012 00:20:43 +0400 |
Boris Nagaev |
pair-cores/wt: add g++ 4.5 to deps |
| Fri, 09 Mar 2012 00:11:16 +0400 |
Boris Nagaev |
pair-cores/web is compatible with Wt 3.1.2; no openssl and curl deps |
| Tue, 06 Mar 2012 22:40:22 +0400 |
Boris Nagaev |
allpy/structure: remove useless import of a code from Bio.PDB.DSSP |
| Tue, 06 Mar 2012 22:38:54 +0400 |
Boris Nagaev |
SequenceSecondaryStructureMarkup: note that old dssp program must be used |
| Tue, 06 Mar 2012 20:29:45 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Tue, 06 Mar 2012 20:29:34 +0400 |
Daniil Alexeyevsky |
Added generic alignment & sequence markup classes for atomic types: int, str, char, float, bool -- and tests for them (see #94,#55) |
| Tue, 06 Mar 2012 19:23:24 +0400 |
Boris Nagaev |
structure, blocks_to_homology: sure not to add 'number' markup multiple times |
| Tue, 06 Mar 2012 19:21:59 +0400 |
Boris Nagaev |
structure, ignore_one_ss: fix a crash for alignments of >=3 sequences |
| Tue, 06 Mar 2012 16:08:49 +0400 |
Daniil Alexeyevsky |
Automated merge with ssh://kodomo/allpy |
| Tue, 06 Mar 2012 16:07:36 +0400 |
Daniil Alexeyevsky |
Added util markup_to_html.py that outputs simple HTML table with marked up alignment |
| Tue, 06 Mar 2012 10:14:50 +0400 |
Boris Nagaev |
pair-cores/web: add boost >= 1.44 dep to README.rst file |
| Sun, 04 Mar 2012 18:55:59 +0400 |
Boris Nagaev |
pair-cores/web: add Reset and Refresh buttons |
| Sun, 04 Mar 2012 02:03:31 +0400 |
Boris Nagaev |
pair-cores/web: fix ``environment'' target of Makefile |
| Sun, 04 Mar 2012 01:19:54 +0400 |
Boris Nagaev |
pair-cores/web: update wt-classes to 1.3.3 |
| Sun, 04 Mar 2012 01:14:28 +0400 |
Boris Nagaev |
pair-cores/web: add some css |
| Sun, 04 Mar 2012 00:31:09 +0400 |
Boris Nagaev |
pair-cores/web: improve check that only one of (alignment, markup) was provided |
| Sun, 04 Mar 2012 00:30:14 +0400 |
Boris Nagaev |
pair-cores/web: add contents from blocks3d web interface |
| Sun, 04 Mar 2012 00:04:28 +0400 |
Boris Nagaev |
pair-cores/web: rename variable blocks3d_html to high_html |
| Sun, 04 Mar 2012 00:01:37 +0400 |
Boris Nagaev |
pair-cores/web: add translations |
| Sat, 03 Mar 2012 23:06:17 +0400 |
Boris Nagaev |
pair-cores/web: fix ``environment'' target of Makefile |
| Sat, 03 Mar 2012 22:58:13 +0400 |
Boris Nagaev |
pair-cores/web: update wt-classes to 1.3.2 |
| Sat, 03 Mar 2012 22:51:15 +0400 |
Boris Nagaev |
pair-cores/web: fix ignore_one_ss argument passing |
| Sat, 03 Mar 2012 02:28:03 +0400 |
Boris Nagaev |
pair-cores/web: line edit inputs are mandatory |
| Sat, 03 Mar 2012 02:24:39 +0400 |
Boris Nagaev |
pair-cores/web: add default values to line edit inputs |
| Sat, 03 Mar 2012 01:52:46 +0400 |
Boris Nagaev |
add web interface for pair-cores |
| Sat, 03 Mar 2012 16:05:58 +0400 |
Boris Nagaev |
pair-cores: split discontinuous blocks from highest_blocks() to continuous parts |
| Sat, 03 Mar 2012 15:45:13 +0400 |
Boris Nagaev |
pair_cores: revert try-catch in main(), removed accidentally in ce4ccbd2a1c2 |
| Fri, 02 Mar 2012 10:12:27 +0400 |
Boris Nagaev |
update NEWS with old changes |
| Fri, 02 Mar 2012 10:07:50 +0400 |
Boris Nagaev |
update NEWS with latest changes |
| Thu, 01 Mar 2012 01:11:34 +0400 |
Boris Nagaev |
pair_cores: add --pair-timeout (Bron-Kerbosh (pair cores) timeout) |
| Thu, 01 Mar 2012 01:05:24 +0400 |
Boris Nagaev |
pair_cores: print default values of command line args in help message |
| Thu, 01 Mar 2012 00:24:08 +0400 |
Boris Nagaev |
pair_cores: add another high blocks building algo (or blocks3d algo optionally) |
| Wed, 29 Feb 2012 22:40:54 +0400 |
Boris Nagaev |
allpy/structure: add method blocks_from_homology() |
| Wed, 29 Feb 2012 15:30:45 +0400 |
Boris Nagaev |
allpy/homology: fix a typo in docs |
| Wed, 29 Feb 2012 15:16:46 +0400 |
Boris Nagaev |
pair_cores: add blocks3d outputs (high blocks) |
| Wed, 29 Feb 2012 15:13:12 +0400 |
Boris Nagaev |
allpy/structure: add ``parts'' argument to blocks3d() |
| Wed, 29 Feb 2012 11:39:32 +0400 |
Boris Nagaev |
pair_cores.py: add -w option (min_width) |
| Wed, 29 Feb 2012 11:37:23 +0400 |
Boris Nagaev |
add class Column to */protein_pdb.py |
| Wed, 29 Feb 2012 11:00:56 +0400 |
Boris Nagaev |
allpy/structure: add description of ignore_one_ss argument to .blocks3d() |
