allpy
changeset 511:e115d12d354b
geometrical_core(): fix a bug
column can be included in gc only if it is represented in all sequences
| author | boris (kodomo) <bnagaev@gmail.com> |
|---|---|
| date | Wed, 23 Feb 2011 20:05:14 +0300 |
| parents | 45d3c03b88aa |
| children | e5ee982db23d |
| files | allpy/structure.py |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
line diff
1.1 --- a/allpy/structure.py Wed Feb 23 19:52:59 2011 +0300 1.2 +++ b/allpy/structure.py Wed Feb 23 20:05:14 2011 +0300 1.3 @@ -218,7 +218,7 @@ 1.4 ca2 = r2['CA'] 1.5 d = ca1 - ca2 # Bio.PDB feature 1.6 distances.append(d) 1.7 - if len(distances) >= 2: 1.8 + if len(distances) == len(self.sequences): 1.9 delta = max(distances) - min(distances) 1.10 if delta <= max_delta: 1.11 edge = Graph.edge(column1, column2)