allpy
changeset 268:3d61ade3a5e5
Regenerated Sphinx autodocs cleaner.
| author | Daniil Alexeyevsky <me.dendik@gmail.com> |
|---|---|
| date | Wed, 15 Dec 2010 02:13:30 +0300 |
| parents | f911b74f72d3 |
| children | cf24b0082aa0 |
| files | docs/source/_monomer.rst docs/source/alignment.rst docs/source/allpy/base.rst docs/source/allpy/data.rst docs/source/allpy/dna.rst docs/source/allpy/fasta.rst docs/source/allpy/graph.rst docs/source/allpy/modules.rst docs/source/allpy/pdb.rst docs/source/allpy/protein.rst docs/source/allpy/rna.rst docs/source/base.rst docs/source/block.rst docs/source/data.rst docs/source/dna.rst docs/source/fasta.rst docs/source/graph.rst docs/source/markup.rst docs/source/modules.rst docs/source/pdb.rst docs/source/protein.rst docs/source/rna.rst docs/source/sequence.rst |
| diffstat | 23 files changed, 108 insertions(+), 173 deletions(-) [+] |
line diff
1.1 --- a/docs/source/_monomer.rst Wed Dec 15 01:51:52 2010 +0300 1.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 1.3 @@ -1,12 +0,0 @@ 1.4 -_Monomer Documentation 1.5 -====================== 1.6 - 1.7 -This page contains the _Monomer Module documentation. 1.8 - 1.9 -The :mod:`_monomer` Module 1.10 --------------------------- 1.11 - 1.12 -.. automodule:: allpy._monomer 1.13 - :members: 1.14 - :undoc-members: 1.15 - :show-inheritance:
2.1 --- a/docs/source/alignment.rst Wed Dec 15 01:51:52 2010 +0300 2.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 2.3 @@ -1,12 +0,0 @@ 2.4 -Alignment Documentation 2.5 -======================= 2.6 - 2.7 -This page contains the Alignment Module documentation. 2.8 - 2.9 -The :mod:`alignment` Module 2.10 ---------------------------- 2.11 - 2.12 -.. automodule:: allpy.alignment 2.13 - :members: 2.14 - :undoc-members: 2.15 - :show-inheritance:
3.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 3.2 +++ b/docs/source/allpy/base.rst Wed Dec 15 02:13:30 2010 +0300 3.3 @@ -0,0 +1,12 @@ 3.4 +Base Documentation 3.5 +================== 3.6 + 3.7 +This page contains the Base Module documentation. 3.8 + 3.9 +The :mod:`base` Module 3.10 +---------------------- 3.11 + 3.12 +.. automodule:: allpy.base 3.13 + :members: 3.14 + :undoc-members: 3.15 + :show-inheritance:
4.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 4.2 +++ b/docs/source/allpy/data.rst Wed Dec 15 02:13:30 2010 +0300 4.3 @@ -0,0 +1,5 @@ 4.4 +Data Documentation 4.5 +================== 4.6 + 4.7 +This page contains the Data Package documentation. 4.8 +
5.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 5.2 +++ b/docs/source/allpy/dna.rst Wed Dec 15 02:13:30 2010 +0300 5.3 @@ -0,0 +1,12 @@ 5.4 +Dna Documentation 5.5 +================= 5.6 + 5.7 +This page contains the Dna Module documentation. 5.8 + 5.9 +The :mod:`dna` Module 5.10 +--------------------- 5.11 + 5.12 +.. automodule:: allpy.dna 5.13 + :members: 5.14 + :undoc-members: 5.15 + :show-inheritance:
6.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 6.2 +++ b/docs/source/allpy/fasta.rst Wed Dec 15 02:13:30 2010 +0300 6.3 @@ -0,0 +1,12 @@ 6.4 +Fasta Documentation 6.5 +=================== 6.6 + 6.7 +This page contains the Fasta Module documentation. 6.8 + 6.9 +The :mod:`fasta` Module 6.10 +----------------------- 6.11 + 6.12 +.. automodule:: allpy.fasta 6.13 + :members: 6.14 + :undoc-members: 6.15 + :show-inheritance:
7.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 7.2 +++ b/docs/source/allpy/graph.rst Wed Dec 15 02:13:30 2010 +0300 7.3 @@ -0,0 +1,12 @@ 7.4 +Graph Documentation 7.5 +=================== 7.6 + 7.7 +This page contains the Graph Module documentation. 7.8 + 7.9 +The :mod:`graph` Module 7.10 +----------------------- 7.11 + 7.12 +.. automodule:: allpy.graph 7.13 + :members: 7.14 + :undoc-members: 7.15 + :show-inheritance:
8.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 8.2 +++ b/docs/source/allpy/modules.rst Wed Dec 15 02:13:30 2010 +0300 8.3 @@ -0,0 +1,19 @@ 8.4 +Project Documentation 8.5 +===================== 8.6 + 8.7 +This page contains the Project Modules documentation. 8.8 + 8.9 +Modules: 8.10 +-------- 8.11 + 8.12 +.. toctree:: 8.13 + :maxdepth: 4 8.14 + 8.15 + base 8.16 + data 8.17 + dna 8.18 + fasta 8.19 + graph 8.20 + pdb 8.21 + protein 8.22 + rna
9.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 9.2 +++ b/docs/source/allpy/pdb.rst Wed Dec 15 02:13:30 2010 +0300 9.3 @@ -0,0 +1,12 @@ 9.4 +Pdb Documentation 9.5 +================= 9.6 + 9.7 +This page contains the Pdb Module documentation. 9.8 + 9.9 +The :mod:`pdb` Module 9.10 +--------------------- 9.11 + 9.12 +.. automodule:: allpy.pdb 9.13 + :members: 9.14 + :undoc-members: 9.15 + :show-inheritance:
10.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 10.2 +++ b/docs/source/allpy/protein.rst Wed Dec 15 02:13:30 2010 +0300 10.3 @@ -0,0 +1,12 @@ 10.4 +Protein Documentation 10.5 +===================== 10.6 + 10.7 +This page contains the Protein Module documentation. 10.8 + 10.9 +The :mod:`protein` Module 10.10 +------------------------- 10.11 + 10.12 +.. automodule:: allpy.protein 10.13 + :members: 10.14 + :undoc-members: 10.15 + :show-inheritance:
11.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000 11.2 +++ b/docs/source/allpy/rna.rst Wed Dec 15 02:13:30 2010 +0300 11.3 @@ -0,0 +1,12 @@ 11.4 +Rna Documentation 11.5 +================= 11.6 + 11.7 +This page contains the Rna Module documentation. 11.8 + 11.9 +The :mod:`rna` Module 11.10 +--------------------- 11.11 + 11.12 +.. automodule:: allpy.rna 11.13 + :members: 11.14 + :undoc-members: 11.15 + :show-inheritance:
12.1 --- a/docs/source/base.rst Wed Dec 15 01:51:52 2010 +0300 12.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 12.3 @@ -1,12 +0,0 @@ 12.4 -Base Documentation 12.5 -================== 12.6 - 12.7 -This page contains the Base Module documentation. 12.8 - 12.9 -The :mod:`base` Module 12.10 ----------------------- 12.11 - 12.12 -.. automodule:: allpy.base 12.13 - :members: 12.14 - :undoc-members: 12.15 - :show-inheritance:
13.1 --- a/docs/source/block.rst Wed Dec 15 01:51:52 2010 +0300 13.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 13.3 @@ -1,12 +0,0 @@ 13.4 -Block Documentation 13.5 -=================== 13.6 - 13.7 -This page contains the Block Module documentation. 13.8 - 13.9 -The :mod:`block` Module 13.10 ------------------------ 13.11 - 13.12 -.. automodule:: allpy.block 13.13 - :members: 13.14 - :undoc-members: 13.15 - :show-inheritance:
14.1 --- a/docs/source/data.rst Wed Dec 15 01:51:52 2010 +0300 14.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 14.3 @@ -1,5 +0,0 @@ 14.4 -Data Documentation 14.5 -================== 14.6 - 14.7 -This page contains the Data Package documentation. 14.8 -
15.1 --- a/docs/source/dna.rst Wed Dec 15 01:51:52 2010 +0300 15.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 15.3 @@ -1,12 +0,0 @@ 15.4 -Dna Documentation 15.5 -================= 15.6 - 15.7 -This page contains the Dna Module documentation. 15.8 - 15.9 -The :mod:`dna` Module 15.10 ---------------------- 15.11 - 15.12 -.. automodule:: allpy.dna 15.13 - :members: 15.14 - :undoc-members: 15.15 - :show-inheritance:
16.1 --- a/docs/source/fasta.rst Wed Dec 15 01:51:52 2010 +0300 16.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 16.3 @@ -1,12 +0,0 @@ 16.4 -Fasta Documentation 16.5 -=================== 16.6 - 16.7 -This page contains the Fasta Module documentation. 16.8 - 16.9 -The :mod:`fasta` Module 16.10 ------------------------ 16.11 - 16.12 -.. automodule:: allpy.fasta 16.13 - :members: 16.14 - :undoc-members: 16.15 - :show-inheritance:
17.1 --- a/docs/source/graph.rst Wed Dec 15 01:51:52 2010 +0300 17.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 17.3 @@ -1,12 +0,0 @@ 17.4 -Graph Documentation 17.5 -=================== 17.6 - 17.7 -This page contains the Graph Module documentation. 17.8 - 17.9 -The :mod:`graph` Module 17.10 ------------------------ 17.11 - 17.12 -.. automodule:: allpy.graph 17.13 - :members: 17.14 - :undoc-members: 17.15 - :show-inheritance:
18.1 --- a/docs/source/markup.rst Wed Dec 15 01:51:52 2010 +0300 18.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 18.3 @@ -1,12 +0,0 @@ 18.4 -Markup Documentation 18.5 -==================== 18.6 - 18.7 -This page contains the Markup Module documentation. 18.8 - 18.9 -The :mod:`markup` Module 18.10 ------------------------- 18.11 - 18.12 -.. automodule:: allpy.markup 18.13 - :members: 18.14 - :undoc-members: 18.15 - :show-inheritance:
19.1 --- a/docs/source/modules.rst Wed Dec 15 01:51:52 2010 +0300 19.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 19.3 @@ -1,24 +0,0 @@ 19.4 -Project Documentation 19.5 -===================== 19.6 - 19.7 -This page contains the Project Modules documentation. 19.8 - 19.9 -Modules: 19.10 --------- 19.11 - 19.12 -.. toctree:: 19.13 - :maxdepth: 4 19.14 - 19.15 - _monomer 19.16 - alignment 19.17 - base 19.18 - block 19.19 - data 19.20 - dna 19.21 - fasta 19.22 - graph 19.23 - markup 19.24 - pdb 19.25 - protein 19.26 - rna 19.27 - sequence
20.1 --- a/docs/source/pdb.rst Wed Dec 15 01:51:52 2010 +0300 20.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 20.3 @@ -1,12 +0,0 @@ 20.4 -Pdb Documentation 20.5 -================= 20.6 - 20.7 -This page contains the Pdb Module documentation. 20.8 - 20.9 -The :mod:`pdb` Module 20.10 ---------------------- 20.11 - 20.12 -.. automodule:: allpy.pdb 20.13 - :members: 20.14 - :undoc-members: 20.15 - :show-inheritance:
21.1 --- a/docs/source/protein.rst Wed Dec 15 01:51:52 2010 +0300 21.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 21.3 @@ -1,12 +0,0 @@ 21.4 -Protein Documentation 21.5 -===================== 21.6 - 21.7 -This page contains the Protein Module documentation. 21.8 - 21.9 -The :mod:`protein` Module 21.10 -------------------------- 21.11 - 21.12 -.. automodule:: allpy.protein 21.13 - :members: 21.14 - :undoc-members: 21.15 - :show-inheritance:
22.1 --- a/docs/source/rna.rst Wed Dec 15 01:51:52 2010 +0300 22.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 22.3 @@ -1,12 +0,0 @@ 22.4 -Rna Documentation 22.5 -================= 22.6 - 22.7 -This page contains the Rna Module documentation. 22.8 - 22.9 -The :mod:`rna` Module 22.10 ---------------------- 22.11 - 22.12 -.. automodule:: allpy.rna 22.13 - :members: 22.14 - :undoc-members: 22.15 - :show-inheritance:
23.1 --- a/docs/source/sequence.rst Wed Dec 15 01:51:52 2010 +0300 23.2 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 23.3 @@ -1,12 +0,0 @@ 23.4 -Sequence Documentation 23.5 -====================== 23.6 - 23.7 -This page contains the Sequence Module documentation. 23.8 - 23.9 -The :mod:`sequence` Module 23.10 --------------------------- 23.11 - 23.12 -.. automodule:: allpy.sequence 23.13 - :members: 23.14 - :undoc-members: 23.15 - :show-inheritance: