allpy
changeset 1122:5f9c14e679c1
pair_cores: add error messages to rethrown exceptions
| author | Boris Nagaev <bnagaev@gmail.com> |
|---|---|
| date | Fri, 21 Dec 2012 15:07:05 +0400 |
| parents | 835b55bfc6b2 |
| children | 3ce9ab9a5d29 |
| files | pair_cores/pair_cores.py |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
line diff
1.1 --- a/pair_cores/pair_cores.py Fri Dec 21 15:04:53 2012 +0400 1.2 +++ b/pair_cores/pair_cores.py Fri Dec 21 15:07:05 2012 +0400 1.3 @@ -54,7 +54,7 @@ 1.4 alignment = Alignment().append_file(input_file, format=input_file_format) 1.5 except Exception, e: 1.6 raise Exception("Can not read input file %s (%s: %s)" % \ 1.7 - (input_file, e.__class__, e)) 1.8 + (input_file, e.__class__, e.message)) 1.9 unique_sequence_names = set([s.name for s in alignment.sequences]) 1.10 if len(unique_sequence_names) != len(alignment.sequences): 1.11 raise Exception("Duplicate sequence names in %s" % input_file) 1.12 @@ -66,7 +66,7 @@ 1.13 sequence.auto_pdb(pdb_getter=pdb_getter, read_local=read_local) 1.14 except Exception, e: 1.15 raise Exception("Can't load structure for sequence %s from file %s (%s: %s)" % \ 1.16 - (sequence.name, input_file, e.__class__, e)) 1.17 + (sequence.name, input_file, e.__class__, e.message)) 1.18 if len(alignment.sequences) < 2: 1.19 raise Exception("Alignment from file %s has too few sequences" % input_file) 1.20 block = Block.from_alignment(alignment)