Документ взят из кэша поисковой машины. Адрес оригинального документа : http://kodomo.fbb.msu.ru/hg/allpy/raw-annotate/0d39f47c619d/NEWS Дата изменения: Unknown Дата индексирования: Sun Feb 3 12:43:33 2013 Кодировка:

bnagaev@992: * new: add an argument not to save downloaded pdb (CachedDownloadPdb)
bnagaev@992: * new: Geometrical core improvement: ignore cores, owned by one SS element
bnagaev@992: * new: allow to load custom pdbs (allpy.structure)
bnagaev@992: * new: add pymol superimposition feature draft (allpy.structure)
bnagaev@992:
bnagaev@991: * new: add features of blocks3d.py to pair_cores.py
bnagaev@991: * new: add ``parts'' argument to blocks3d() (allpy.structure)
bnagaev@991: * new: add method blocks_from_homology() (allpy.structure)
bnagaev@991: * new: add MonomerHomology-based high blocks building algo to pair-cores
bnagaev@991: * new: print default values of command line args in help message (pair_cores)
bnagaev@991:
dendik@848: 1.4.1
dendik@848:
dendik@848: This is a code cleanup release.
dendik@848: Nothing should change in the interface or behaviour at all.
dendik@848:
dendik@848: 1.4.0 (2011-07-20)
dendik@624:
dendik@697: * new: Alignments, Sequences and Blocks now can have Markups, see the wiki
dendik@717: * new: File format 'markup' for storing alignment with arbitrary markups
dendik@633: * new: processor allpy.processors.Needle()
dendik@633: * new: method allpy.base.Alignment.rows_as_strings()
dendik@650: * new: method allpy.base.Alignment.row_as_list(sequence)
dendik@650: * new: method allpy.base.Alignment.row_as_string(sequence)
dendik@657: * new: columns_as_lists() returns list of lists, each has 'column' attribute
dendik@662: * new: javascript viewer colors columns by conservedness
dendik@624:
dendik@602: 1.3.0 (2011-04-15)
dendik@602:
dendik@602: * new: started NEWS file
dendik@602: * new: started tracking version numbers