| age |
author |
description |
| Fri, 21 Dec 2012 15:07:05 +0400 |
Boris Nagaev |
pair_cores: add error messages to rethrown exceptions |
| Sat, 02 Jun 2012 19:33:42 +0400 |
Daniil Alexeyevsky |
Added backreferences to `Seqeunce`s from `Monomer`s (closes #49) |
| Thu, 17 May 2012 01:49:47 +0400 |
Boris Nagaev |
pair-cores: exit with status 255 on fail |
| Thu, 17 May 2012 01:32:26 +0400 |
Boris Nagaev |
pair-cores: add option '--no-read-local' |
| Tue, 03 Apr 2012 12:25:56 +0400 |
Boris Nagaev |
Merge fix of typo in algorithm name Bron?Kerbosch from default into 1.4.21.4.2 |
| Tue, 03 Apr 2012 12:06:26 +0400 |
Boris Nagaev |
fix a typo in algorithm name Bron?Kerbosch in program helps |
| Tue, 20 Mar 2012 01:39:28 +0400 |
Boris Nagaev |
Merge pair-cores new option for pymol high blocks from default into 1.4.21.4.2 |
| Mon, 19 Mar 2012 15:22:32 +0400 |
Boris Nagaev |
pair-cores: add a patch upgrading allpy.structure1.4.2 |
| Mon, 19 Mar 2012 13:52:56 +0400 |
Boris Nagaev |
Merged utils, pair_cores, blocks3d and geometrical-core from 9ae23 into 1.4.21.4.2 |
| Mon, 19 Mar 2012 22:56:16 +0400 |
Boris Nagaev |
pair-cores: add option to output high blocks in pymol |
| Wed, 14 Mar 2012 17:54:01 +0400 |
Boris Nagaev |
pair-cores: fix program fault if no high blocks were found |
| Fri, 09 Mar 2012 16:56:24 +0400 |
Boris Nagaev |
pair-cores: filter out blocks of 1 sequnce (new high blocks algorithm) |
| Sat, 03 Mar 2012 16:05:58 +0400 |
Boris Nagaev |
pair-cores: split discontinuous blocks from highest_blocks() to continuous parts |
| Sat, 03 Mar 2012 15:45:13 +0400 |
Boris Nagaev |
pair_cores: revert try-catch in main(), removed accidentally in ce4ccbd2a1c2 |
| Thu, 01 Mar 2012 01:11:34 +0400 |
Boris Nagaev |
pair_cores: add --pair-timeout (Bron-Kerbosh (pair cores) timeout) |
| Thu, 01 Mar 2012 01:05:24 +0400 |
Boris Nagaev |
pair_cores: print default values of command line args in help message |
| Thu, 01 Mar 2012 00:24:08 +0400 |
Boris Nagaev |
pair_cores: add another high blocks building algo (or blocks3d algo optionally) |
| Wed, 29 Feb 2012 15:16:46 +0400 |
Boris Nagaev |
pair_cores: add blocks3d outputs (high blocks) |
| Wed, 29 Feb 2012 11:39:32 +0400 |
Boris Nagaev |
pair_cores.py: add -w option (min_width) |
| Sat, 25 Feb 2012 22:08:17 +0400 |
Boris Nagaev |
blocks3d: do not use pymol output feature of allpy trunc1.4.2 |
| Sat, 25 Feb 2012 22:06:38 +0400 |
Boris Nagaev |
pair-cores and geometrical-core: do not use ignore_one_ss feature of allpy trunc1.4.2 |
| Fri, 21 Oct 2011 13:48:47 +0300 |
Boris Nagaev |
add pymol superimposition feature (draft) |
| Mon, 10 Oct 2011 22:03:58 +0400 |
Boris Nagaev |
fix pair_cores: add default value for argument ignore_one_ss of homology_from_3d() |
| Fri, 23 Sep 2011 14:06:43 +0400 |
Boris Nagaev |
pair_cores.py: pass forgotten ignore_one_ss argument to pair_core_parts() |
| Sun, 18 Sep 2011 16:32:59 +0400 |
Boris Nagaev |
Geometrical core improvement: ignore cores, owned by one SS element |
| Fri, 15 Jul 2011 12:27:21 +0400 |
boris (kodomo) |
pair_cores: more information in exceptions when reading input and loading pdb |
| Thu, 14 Jul 2011 17:07:07 +0400 |
Daniil Alexeyevsky |
pair_cores: no need to import extract_pfam for SequencePdbRsiMarkup anymore |
| Wed, 13 Jul 2011 17:14:42 +0200 |
boris |
pair_cores: pass xyz_only parameter to markup_loader |
| Wed, 13 Jul 2011 02:19:40 +0400 |
boris (kodomo) |
pair_cores: change metavar for pdb cache directory from FILE to DIR |
| Wed, 13 Jul 2011 02:18:17 +0400 |
boris (kodomo) |
pair_cores: create main function and run it in try-clause |
| Wed, 13 Jul 2011 01:54:26 +0400 |
boris (kodomo) |
pair_cores: set ca_xyz attribute of monomer when markups is used |
| Wed, 13 Jul 2011 01:47:32 +0400 |
boris (kodomo) |
pair_cores: use pdb_getter when loading from markup |
| Tue, 12 Jul 2011 23:57:18 +0400 |
boris (kodomo) |
refactoring of pair_cores.py |
| Fri, 08 Jul 2011 00:23:51 +0200 |
boris |
pair_cores: add required option for output file with classes of homology |
| Fri, 29 Apr 2011 17:01:29 +0400 |
boris (kodomo) |
Backout 612:3a27920ff4ed and 613:71910cefe37a |
| Tue, 05 Apr 2011 23:35:31 +0400 |
boris (kodomo) |
pair_cores.py: skip joining cores |
| Sat, 02 Apr 2011 17:04:11 +0400 |
boris (kodomo) |
pair_cores: multiprocessing, no forking |
| Sat, 26 Mar 2011 10:48:11 +0300 |
boris (kodomo) |
add pair_cores program package |
