| age |
author |
description |
| Mon, 25 Jul 2011 14:40:41 +0400 |
Daniil Alexeyevsky |
Added fileio.BioPythonFile as a method to parse unknown file formats [closes #106] |
| Thu, 21 Jul 2011 13:12:54 +0400 |
Daniil Alexeyevsky |
Allow markup to be tagged as saved / not saved (closes #83) |
| Fri, 15 Jul 2011 18:38:01 +0400 |
Daniil Alexeyevsky |
Bug: alignment IO recorded incorrect value to sequence's source attribute -- fixed |
| Fri, 15 Jul 2011 18:01:31 +0400 |
Daniil Alexeyevsky |
allpy.fileio. markup filetype now allows either - or _ to be used in headers interchangeably [closes #89] |
| Tue, 12 Jul 2011 15:00:37 +0400 |
Daniil Alexeyevsky |
Fixed markup fileIO for cases when gaps or subformat is specified. Updated tests. |
| Tue, 12 Jul 2011 14:37:05 +0400 |
Daniil Alexeyevsky |
allpy.fileio: switched to using iterator-based read methods everywhere. |
| Thu, 07 Jul 2011 22:32:21 +0400 |
Daniil Alexeyevsky |
Implemented markup fileIO (closes #56) |
| Thu, 07 Jul 2011 19:21:12 +0400 |
Daniil Alexeyevsky |
Added fileio.File.read_alignment and fileio.File.write_alignment [closes #57] |
| Fri, 03 Jun 2011 15:29:47 +0400 |
Daniil Alexeyevsky |
allpy.fileio: use stdin/stdout when communicating with EMBOSS [closes #38] |
| Mon, 30 May 2011 20:38:58 +0400 |
Daniil Alexeyevsky |
allpy.fileio: wrapped some calls into try-finally; EmbossFile should now behave correctly if exceptions occur now |
| Wed, 18 May 2011 22:26:35 +0400 |
Daniil Alexeyevsky |
Fix fileio.EmbossFile: it was totally broken and serialized file objects to make arguments for seqret |
| Sat, 26 Mar 2011 00:42:07 +0300 |
Daniil Alexeyevsky |
Probably fixed fileio.EmbossFile.write_strings error in unlink |
| Sat, 26 Mar 2011 00:18:15 +0300 |
Daniil Alexeyevsky |
Typo in allpy.fileio.write_strings |
| Thu, 24 Mar 2011 21:21:11 +0300 |
Daniil Alexeyevsky |
Merge in favour of rewritten fileio |
| Thu, 24 Mar 2011 20:46:06 +0300 |
Daniil Alexeyevsky |
Clean rewrite of fileio |
| Thu, 17 Mar 2011 11:39:58 +0300 |
boris (kodomo) |
fileio: fix export to msf |
| Wed, 23 Feb 2011 19:52:04 +0300 |
boris (kodomo) |
export to msf: fix bugs |
| Mon, 14 Feb 2011 22:17:44 +0300 |
boris |
fix MsfIo |
| Mon, 14 Feb 2011 16:19:42 +0300 |
boris |
msf io: fix bugs |
| Fri, 11 Feb 2011 15:04:17 +0300 |
boris (netbook) |
add fileio module, remove fasta module, add msf support (see #31) |
