view allpy/config.py @ 1080:fdc2d3594a3e
allpy.base: Added decency verification function to alignments (closes #98)
Currently, the verification function asserts that no two sequences in an
alignment have the same identifier.
| author |
Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> |
| date |
Wed, 30 May 2012 12:43:09 +0400 |
| parents |
3cc7ef543da5 |
| children |
6c7e74a75d13 |
line source
3 delta = 2.0 # for geometrical core building
4 minsize = 20 # min size of returning cores
5 maxabsent = 0.15 # deprecated?
7 # defaults for set_pdb_chain
8 min_continuous_match = 5
14 # pdb download url (XXXX is pdb code place)
15 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb'
16 pdb_path = '/tmp/%s.pdb'
17 timeout = 10 # time in sec. for BRON-KERBOSCH algorithm
20 # min part or new atoms in new alternative core
23 # max number of cores (including main core)
28 timeout_2 = 10 # bron-kerbosch for blocks
