allpy: ee2c10aa74b8 README.devel

allpy

view README.devel @ 610:ee2c10aa74b8

paired_cores/score.py: change method of score evaluation Boundary positions of blocks are not considered. Columns represented with one sequence or pure gap columns are not considered. Calculate weighted average of number of connected components in columns. Weight of column = l / sum(l) (l = number of sequnces representing column)

author	boris (kodomo) <bnagaev@gmail.com>
date	Tue, 05 Apr 2011 23:11:41 +0400
parents	951b7e159698
children	b87eb91bd929

line source

1 To use the library in-place, without installing, you have to add it's

2 directory to PYTHONPATH.

4 e.g, type this in your shell:

6 export PYTHONPATH=`pwd`

8 alternatively, you can type:

10 . ./SETPATH

12 which adds the right path to PYTHONPATH and also adds 'utils' directory

13 to PATH