allpy: ee2c10aa74b8 Makefile

allpy

view Makefile @ 610:ee2c10aa74b8

paired_cores/score.py: change method of score evaluation Boundary positions of blocks are not considered. Columns represented with one sequence or pure gap columns are not considered. Calculate weighted average of number of connected components in columns. Weight of column = l / sum(l) (l = number of sequnces representing column)

author	boris (kodomo) <bnagaev@gmail.com>
date	Tue, 05 Apr 2011 23:11:41 +0400
parents	747b4fef09e0
children	b291f9c34b49

line source

1 components_cif_gz_url = \

2 ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/monomers/components.cif.gz

3 codes_py = allpy/data/codes.py

4 components_cif = allpy/data/components.cif

6 all: doc codes tests

8 tests:

9 nosetests

11 doc:

12 sphinx-autopackage --suffix=rst --dest-dir=docs/source/allpy/ allpy

13 $(MAKE) -C docs html

15 force-doc:

16 rm docs/source/allpy/*

17 rm -rf docs/build

18 $(MAKE) doc

20 codes: $(codes_py)

22 force-codes:

23 rm $(codes_py)

24 $(MAKE) codes

26 $(codes_py): $(components_cif)

27 python allpy/data/mkcodes.py -i $< -o $@

29 $(components_cif):

30 wget -O - $(components_cif_gz_url) | zcat > $@