allpy: d9a3e99ae19b Makefile

allpy

view Makefile @ 666:d9a3e99ae19b

blocks3d/www: mark conservative columns inside blocks Previously letters were marked if column is conservative over all sequences of alignment. Currently it was changed to conservatism over block including this letter. Additional attribute storing conservatism of columns inside block was added to block. This caused all colors of blocks to be changed.

author	boris <bnagaev@gmail.com>
date	Fri, 01 Jul 2011 03:21:08 +0400
parents	2841177ebc2b
children	45c38f47e571

line source

1 components_cif_gz_url = \

2 ftp://ftp.ebi.ac.uk/pub/databases/rcsb/pdb/data/monomers/components.cif.gz

3 codes_py = allpy/data/codes.py

4 components_cif = allpy/data/components.cif

6 all: doc codes tests

8 tests:

9 nosetests --with-coverage

11 doc:

12 sphinx-autopackage --suffix=rst --dest-dir=docs/source/allpy/ allpy

13 $(MAKE) -C docs html

15 force-doc:

16 rm docs/source/allpy/*

17 rm -rf docs/build

18 $(MAKE) doc

20 codes: $(codes_py)

22 force-codes:

23 rm $(codes_py)

24 $(MAKE) codes

26 $(codes_py): $(components_cif)

27 python allpy/data/mkcodes.py -i $< -o $@

29 $(components_cif):

30 wget -O - $(components_cif_gz_url) | zcat > $@