allpy
view test/usecase2.py @ 385:d7fc6865ce58
refactoring of pdb-related code
* remove (transiently) secstr from pdb.py
* refactoring of pdb loading
* create module protein_pdb with 4 classes with both properties
* make geometrical-core work (with errors and without saving to fasta)
author | boris <bnagaev@gmail.com> |
---|---|
date | Wed, 02 Feb 2011 15:50:20 +0300 |
parents | 0411fa851bba |
children | cc1959669928 |
line source
1 # Fragments are in pair_repeat.fasta
7 """Helper to mark column (given as dict) by identity."""
18 """Helper to mark column of 2 sequences (given as list) by identity."""
26 """Fund long positive runs.
28 This obscure and probably broken function has nothing to do with allpy,
29 so it's presence in the example is unnecessary.
30 """
39 continue
54 continue