allpy: d66d470a9c0a allpy/dna.py

allpy

Code cleanup in base.Alignment._merge helper for base.Alignment.process

author	Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru>
date	Tue, 01 Feb 2011 18:46:23 +0300
parents	24a058450d72
children	df571a5233fb

line source

1 import base

2 import data.codes

4 class Monomer(base.Monomer):

5 """DNA monomers: nucleotides."""

6 type = 'dna'

7 by_code1 = {}

8 by_code3 = {}

9 by_name = {}

10 Monomer._initialize(data.codes.dna)

12 class Sequence(base.Sequence):

13 monomer_type = Monomer

15 class Block(Alignment, base.Block):

16 pass

18 class Alignment(base.Alignment):

19 sequence_type = Sequence

20 block_type = Block

21 # alignment_type is defined at EOF, since name Alignment undefined yet

23 Alignment.alignment_type = Alignment

25 # vim: set ts=4 sts=4 sw=4 et: