allpy: c84a7840f9b8 test/test.py

allpy

Backed out changeset 9f96bc38bc3d There can be more than one GC!!

line source

1 import sys

3 from allpy.lib.project import Project

4 from allpy.lib.block import Block

6 p = Project(open('test.fasta'))

7 print "alignment length: %i" % len(p)

8 print "sequence: %s" % str(p.sequences[0])

10 p.sequences[0].pdb_chain_add(open('1jcc.pdb'), '1jcc', 'B')

11 p.sequences[1].pdb_chain_add(open('1kfm.pdb'), '1kfm', 'A')

13 b = Block(p)

14 print b.geometrical_core()

16 #~ p.muscle_align()

17 #~ p.save_fasta(sys.stdout)