allpy: c4acc245244c allpy/protein.py

allpy

blocks3d/wt improvement make symbolic link files/resources to wt resoure files (instead of copy them to files/resources)

line source

1 import base

2 import data.codes

4 import protein

6 class Monomer(base.Monomer):

7 """Protein monomers: aminoacids."""

8 type = 'protein'

9 types = protein

10 by_code1 = {}

11 by_code3 = {}

12 by_name = {}

13 Monomer._initialize(data.codes.protein)

15 class Protein(list):

16 """User defined protein; list of protein_sequences."""

17 pass

19 class Sequence(base.Sequence):

20 types = protein

22 class Alignment(base.Alignment):

23 types = protein

25 class Block(Alignment, base.Block):

26 pass

28 # vim: set ts=4 sts=4 sw=4 et: