view debian/changelog @ 1091:afed1fd8920c
Added backreferences to `Seqeunce`s from `Monomer`s (closes #49)
WARNING! Please note that `Sequence` API almost changed entirely!
WARNING! This commit immediately obsoletes classmethods `Monomer.from_code*`,
`Monomer.from_name` and `Sequence.from_monomers`.
Turns out, python can not pickle sets/dicts which have keys, which inderecly
reference the set/dict itself: http://bugs.python.org/issue9269 -- which is
excatly what we have in abundance after this change.
To allow pickling added `__getstate__` to `Monomer` to return all attributes,
except `sequence` and `__setstate__` to `Sequence`, which runs through all
monomers and returns the `sequence` attribute back to where it belongs.
WARNING! This MAY result in unexpected behaviour in some cases. (Which should
be rare enough).
| author |
Daniil Alexeyevsky <dendik@kodomo.fbb.msu.ru> |
| date |
Sat, 02 Jun 2012 19:33:42 +0400 |
| parents |
92c006288b08 |
| children |
f356cd61e44b 149cb9d89283 |
line source
1 allpy (1
.4
.3
-0
) unstable; urgency=low
3 * new upstream release; see NEWS for more details
5 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Fri, 25
May 2012 21
:03
:09
+0400
7 allpy (1
.4
.0
-7
) unstable; urgency=medium
9 * blocks3d-wt: fix permissions for /var/run/wt
11 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 14
Dec 2011 20
:46
:35
+0400
13 allpy (1
.4
.0
-6
) unstable; urgency=low
15 * blocks3d-wt: create /var/run/wt by initscript, as required by new Debian policy
16 * new upstream release
18 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 14
Dec 2011 20
:44
:49
+0400
20 allpy (1
.4
.0
-5
) unstable; urgency=low
22 * Fixed symlink in blocks3d.
24 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 02
Nov 2011 20
:44
:10
+0400
26 allpy (1
.4
.0
-4
) unstable; urgency=medium
30 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 12
Oct 2011 16
:24
:07
+0400
32 allpy (1
.4
.0
-3
) unstable; urgency=low
36 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 12
Oct 2011 16
:23
:21
+0400
38 allpy (1
.4
.0
-2
) unstable; urgency=low
40 * Fixed debian/changelog.
42 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 20
Jul 2011 17
:53
:10
+0400
44 allpy (1
.4
.0
-1
) unstable; urgency=low
46 * New allpy release. Features alignment, block and sequence markups. See NEWS
48 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Wed, 20
Jul 2011 17
:50
:30
+0400
50 allpy (1
.3
.0
-2
) unstable; urgency=low
52 * renamed geometrical-core to geometrical-core2 by request of Boris,
53 since the new version may yet be inferior to the old one in some aspects
55 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Fri, 15
Apr 2011 22
:31
:11
+0400
57 allpy (1
.3
.0
-1
) unstable; urgency=low
59 * geometrical-core depends on particular version of python-allpy (>= 1
.0
.0
)
61 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Fri, 15
Apr 2011 22
:07
:18
+0400
63 allpy (1
.3
.0
) unstable; urgency=low
66 Version tracking an compact history starts with this version. The question
67 of related programs and utils versioning is yet undecided.
68 * New geometrical-core requires two packages with local install.
69 Added sed script to add /usr/share/geometrical-core to sys.path.
70 The required packages go there.
72 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Fri, 15
Apr 2011 21
:21
:40
+0400
74 allpy (0
.0
-6
) unstable; urgency=medium
76 * blocks3d-wt: reorganized apache configs for more stable operation
78 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Tue, 22
Feb 2011 17
:16
:50
+0300
80 allpy (0
.0
-5
) unstable; urgency=medium
82 * blocks3d-wt debianization: fixed urls for various resources (js &
85 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Sun, 20
Feb 2011 22
:18
:47
+0300
87 allpy (0
.0
-4
) unstable; urgency=medium
89 * Fixed setup.py to install allpy/data too (surprisingly, it did not
91 * Blocks3D_config: guess location of html.htm properly
92 * Removed mktemp_string in favour of one-time mkdtemp invocation
93 * Debianized blocks3d, blocks3d-wt; fixed debian dependencies for
94 python-allpy where necessary
96 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Sun, 20
Feb 2011 20
:47
:04
+0300
98 allpy (0
.0
-3
) unstable; urgency=medium
100 * Fixed syntax errors in source to soothe postinst scripts.
102 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Mon, 22
Nov 2010 13
:43
:59
+0300
104 allpy (0
.0
-2
) unstable; urgency=medium
106 * Initial debianization.
108 -- Danya Alexeyevsky <dendik@kodomo.fbb.msu.ru> Mon, 15
Nov 2010 17
:40
:37
+0300
110 vim: set ft=debchangelog et ai:
