view allpy/config.py @ 394:ce77534f6594
graph.py: refactoring
* node -> vertex, line -> edge
* improve fast_cliques() and reimplement bron_kerbosh
| author |
boris <bnagaev@gmail.com> |
| date |
Thu, 03 Feb 2011 12:24:54 +0300 |
| parents |
73f9779491ef |
| children |
27e866560087 |
line source
1 delta = 2.0 # for geometrical core building
2 minsize = 20 # min size of returning cores
3 maxabsent = 0.15 # deprecated?
5 # pdb download url (XXXX is pdb code place)
6 pdb_url = 'http://www.pdb.org/pdb/files/%s.pdb'
7 pdb_path = '/tmp/%s.pdb'
8 timeout = 10 # time in sec. for BRON-KERBOSH algorithm
11 # min part or new atoms in new alternative core
14 # max number of cores (including main core)
