allpy: 9c00d065c054 NEWS

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structure, ignore_one_ss: fix a crash for alignments of >=3 sequences This bug is caused by multiple addition of ss markup in geometrical_cores(). It did not appear for pair alignment, since geometrical_cores() was called only once. close #143

author	Boris Nagaev <bnagaev@gmail.com>
date	Tue, 06 Mar 2012 19:21:59 +0400
parents	230aaa440351
children	83167a09a19d 452ac0c16295

line source

1 * new: add an argument not to save downloaded pdb (CachedDownloadPdb)

2 * new: Geometrical core improvement: ignore cores, owned by one SS element

3 * new: allow to load custom pdbs (allpy.structure)

4 * new: add pymol superimposition feature draft (allpy.structure)

6 * new: add features of blocks3d.py to pair_cores.py

7 * new: add ``parts'' argument to blocks3d() (allpy.structure)

8 * new: add method blocks_from_homology() (allpy.structure)

9 * new: add MonomerHomology-based high blocks building algo to pair-cores

10 * new: print default values of command line args in help message (pair_cores)

11 * new: add web interface for pair-cores

13 1.4.1

15 This is a code cleanup release.

16 Nothing should change in the interface or behaviour at all.

18 1.4.0 (2011-07-20)

20 * new: Alignments, Sequences and Blocks now can have Markups, see the wiki

21 * new: File format 'markup' for storing alignment with arbitrary markups

22 * new: processor allpy.processors.Needle()

23 * new: method allpy.base.Alignment.rows_as_strings()

24 * new: method allpy.base.Alignment.row_as_list(sequence)

25 * new: method allpy.base.Alignment.row_as_string(sequence)

26 * new: columns_as_lists() returns list of lists, each has 'column' attribute

27 * new: javascript viewer colors columns by conservedness

29 1.3.0 (2011-04-15)

31 * new: started NEWS file

32 * new: started tracking version numbers